March 2012 Archives by author
Starting: Thu Mar 1 00:46:17 CET 2012
Ending: Sat Mar 31 17:04:59 CEST 2012
Messages: 777
- [BioC] creating GRanges and reading BAM files
David A.
- [BioC] creating GRanges and reading BAM files
David A.
- [BioC] creating GRanges and reading BAM files
David A.
- [BioC] Is this a basic bug or something else ?
ALok
- [BioC] PostForm() with KEGG
Ovokeraye Achinike-Oduaran
- [BioC] Limma and negative p-values
Ovokeraye Achinike-Oduaran
- [BioC] Limma and negative p-values
Ovokeraye Achinike-Oduaran
- [BioC] Limma and negative p-values
Ovokeraye Achinike-Oduaran
- [BioC] Limma and negative p-values
Ovokeraye Achinike-Oduaran
- [BioC] getGEO and wilcox.test
Ovokeraye Achinike-Oduaran
- [BioC] getGEO and wilcox.test
Ovokeraye Achinike-Oduaran
- [BioC] getGEO and wilcox.test
Ovokeraye Achinike-Oduaran
- [BioC] Using the untar() with getGEOSuppFiles()
Ovokeraye Achinike-Oduaran
- [BioC] plotting a CA
Aedin
- [BioC] DESeq estimateDispersion options for lower depth miRNA-seq
Aggarwal, Praful
- [BioC] DESeq estimateDispersion options for lower depth
Aggarwal, Praful
- [BioC] DESeq estimateDispersion options for lower depth
Aggarwal, Praful
- [BioC] DESeq estimateDispersion options for lower depth miRNA-seq
Aggarwal, Praful
- [BioC] beadarray package: BASH error
Kemal Akat
- [BioC] problems generating a gene2GOlist in topGO
Adrian Alexa
- [BioC] World's biggest fake conference in computer science
James Allen
- [BioC] Chairman disappears from world's biggest computer conference
James Allen
- [BioC] error in using random forest
Naomi Altman
- [BioC] error in using random forest
Naomi Altman
- [BioC] fisher exact test pairwise comparisons
Naomi Altman
- [BioC] Limma and negative p-values
Naomi Altman
- [BioC] Help with plot comparison
Simon Anders
- [BioC] re incomplete analysis in Deseq
Simon Anders
- [BioC] A few Q's on using DEXSeq with mucho data
Simon Anders
- [BioC] A few Q's on using DEXSeq with mucho data
Simon Anders
- [BioC] edgeR i get 377 significant genes where in DESeq i got 0
Simon Anders
- [BioC] DESeq without replicates, Problem trying to obtain significant hits
Simon Anders
- [BioC] Limma and negative p-values
Simon Anders
- [BioC] DESeq Question
Simon Anders
- [BioC] DESeq multi-factor export results
Simon Anders
- [BioC] DESeq multi-factor export results
Simon Anders
- [BioC] DESeq vs DEXSeq
Simon Anders
- [BioC] Up & Downregulated genes using DESeq
Simon Anders
- [BioC] Up & Downregulated genes using DESeq
Simon Anders
- [BioC] Up & Downregulated genes using DESeq
Simon Anders
- [BioC] EBImage: Negative pixel intensities?!?
Henrik Bengtsson
- [BioC] EBImage: Negative pixel intensities?!?
Henrik Bengtsson
- [BioC] unable to readImage using EBImage package
Henrik Bengtsson
- [BioC] Help with plot comparison
Tina Asante Boahene
- [BioC] Help with plot comparison
Tina Asante Boahene
- [BioC] Plot Cumulative graph
Tina Asante Boahene
- [BioC] Copy number analysis
Fred Boehm
- [BioC] edgeR-How to obtain a list of normalized expression values
Philipp Brand
- [BioC] Help with plot comparison
Vince S. Buffalo
- [BioC] Newer version of DESeq give much small list of DE genes
Vince S. Buffalo
- [BioC] limma package topTable error
Vincent Carey
- [BioC] snpStats, read.long, alleles in two columns
Vincent Carey
- [BioC] snpStats, read.long, alleles in two columns
Vincent Carey
- [BioC] how can i apply random forest to expression sets of dna microarray
Vincent Carey
- [BioC] getGEO and wilcox.test
Vincent Carey
- [BioC] Please help: SNP Frequency Analysis Package in Bioconductor
Vincent Carey
- [BioC] saving GRangesList object; conversion to GFF
Vincent Carey
- [BioC] Using Anova for microarray data
Vincent Carey
- [BioC] GRENITS won't run with example data
Vincent Carey
- [BioC] dispatch method
Vincent Carey
- [BioC] Rsamtools installation
Vincent Carey
- [BioC] DNAcopy for CNV in SNP Affy 6.0
Vincent Carey
- [BioC] problem creating own org.Ss.eg.db
Marc Carlson
- [BioC] how to get gene list for given GO terms?
Marc Carlson
- [BioC] AnnotationDbi - makeOrgPackageFromNCBI - gene_info table is not populated
Marc Carlson
- [BioC] KEGGSOAP
Marc Carlson
- [BioC] How can I access to a gene set
Marc Carlson
- [BioC] how to make line graph
Benilton Carvalho
- [BioC] arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
Benilton Carvalho
- [BioC] for running arrayQualityMetrics
Benilton Carvalho
- [BioC] pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Benilton Carvalho
- [BioC] crlmm and Affymetrix SNP5 array [genotyping issues]
Benilton Carvalho
- [BioC] GRENITS won't run with example data
Benilton Carvalho
- [BioC] pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Benilton Carvalho
- [BioC] oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
Benilton Carvalho
- [BioC] oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
Benilton Carvalho
- [BioC] how to rank affy probesets by their probe-effect magnitude
Robert Castelo
- [BioC] how to rank affy probesets by their probe-effect magnitude
Robert Castelo
- [BioC] how to rank affy probesets by their probe-effect magnitude
Robert Castelo
- [BioC] Copy number analysis
Mete Civelek
- [BioC] snpStats, read.long, alleles in two columns
David Clayton
- [BioC] Copy number analysis
Djork-Arné Clevert
- [BioC] breastCancerMAINZ package installation problem
Coghlan, Avril
- [BioC] [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute from BioMart
Cook, Malcolm
- [BioC] distanceToNearest for GRanges?
Cook, Malcolm
- [BioC] ChIPpeakAnno as.data.frame error
Mark Cowley
- [BioC] ChIPpeakAnno as.data.frame error
Mark Cowley
- [BioC] ChIPpeakAnno as.data.frame error
Mark Cowley
- [BioC] Copy Number Analysis for Mapreduce
My Coyne
- [BioC] Newer version of DESeq give much small list of DE genes
Creasy, Todd
- [BioC] Newer version of DESeq give much small list of DE genes
Creasy, Todd
- [BioC] Problems using arrayQualityMetrics
Rosalind Cutts
- [BioC] Problems using arrayQualityMetrics
Rosalind Cutts
- [BioC] DESeq Question
Omar Darwish
- [BioC] DESeq Question
Omar Darwish
- [BioC] Up & Downregulated genes using DESeq
Omar Darwish
- [BioC] Up & Downregulated genes using DESeq
Omar Darwish
- [BioC] Difficulty in AnnotatedDataFrame
Deepak Datta
- [BioC] Provide an Example for AnnotatedDataFrame
Deepak Datta
- [BioC] New to Bioconductor is there a better way?
Davis, Brian
- [BioC] How to include external applications in package vignette code?
Sean Davis
- [BioC] Gene-Metabolite correlation network
Sean Davis
- [BioC] Gene-Metabolite correlation network
Sean Davis
- [BioC] Genetic coding impact on variant calling
Sean Davis
- [BioC] Question about Normalization
Sean Davis
- [BioC] how to get pig genome and for miRNA target scan
Sean Davis
- [BioC] problems using the latest version of e1071 (svm)
Sean Davis
- [BioC] Ensembl and refseq genes
Sean Davis
- [BioC] an error from ShortRead
Sean Davis
- [BioC] how to map Affymetrix ID to ensemble gene ID
Sean Davis
- [BioC] biomaRt cannot find getAffyArrays function
Sean Davis
- [BioC] how to map Affymetrix ID to ensemble gene ID
Sean Davis
- [BioC] how to map Affymetrix ID to ensemble gene ID
Sean Davis
- [BioC] getGEO and wilcox.test
Sean Davis
- [BioC] getGEO and wilcox.test
Sean Davis
- [BioC] Summing Views on coverage by base
Sean Davis
- [BioC] Summing Views on coverage by base
Sean Davis
- [BioC] Summing Views on coverage by base
Sean Davis
- [BioC] Manually upregulate a gene
Sean Davis
- [BioC] eset from GEOqury pkg
Sean Davis
- [BioC] SRAdb error
Sean Davis
- [BioC] Please help: SNP Frequency Analysis Package in Bioconductor
Sean Davis
- [BioC] Using Anova for microarray data
Sean Davis
- [BioC] Gene-Metabolite correlation network
Sean Davis
- [BioC] Using Anova for microarray data
Sean Davis
- [BioC] LIMMA package - coefficient not estimable
Sean Davis
- [BioC] LIMMA package - coefficient not estimable
Sean Davis
- [BioC] GEOquery Data structure: GSEMatrix
Sean Davis
- [BioC] How to combine different annotation (chromosomic, genic) when using easyRNASeq (was easyRNASeq error)
Davis, Wade
- [BioC] a possible bug of trimLRPatterns
Marcus Davy
- [BioC] an error from ShortRead
Marcus Davy
- [BioC] a possible bug of trimLRPatterns
Marcus Davy
- [BioC] a possible bug of trimLRPatterns
Marcus Davy
- [BioC] A question about MA and RG lists and normalization with two channel agilent arrays.
Marcus Davy
- [BioC] A question about MA and RG lists and normalization with two channel agilent arrays.
Marcus Davy
- [BioC] post-doctoral position
Day, Roger S
- [BioC] easyRNASeq error
Nicolas Delhomme
- [BioC] easyRNASeq error
Nicolas Delhomme
- [BioC] easyRNASeq error
Nicolas Delhomme
- [BioC] easyRNASeq error
Nicolas Delhomme
- [BioC] easyRNASeq error
Nicolas Delhomme
- [BioC] How to combine different annotation (chromosomic, genic) when using easyRNASeq (was easyRNASeq error)
Nicolas Delhomme
- [BioC] Question about hgu133plus2cdf?
Nicolas Delhomme
- [BioC] Question about hgu133plus2cdf?
Nicolas Delhomme
- [BioC] how to map Affymetrix ID to ensemble gene ID
Nicolas Delhomme
- [BioC] how to map Affymetrix ID to ensemble gene ID
Nicolas Delhomme
- [BioC] running time: countOverlaps & summarizedOverlaps vs. HTSeq
Nicolas Delhomme
- [BioC] running time: countOverlaps & summarizedOverlaps vs. HTSeq
Nicolas Delhomme
- [BioC] running time: countOverlaps & summarizedOverlaps vs. HTSeq
Nicolas Delhomme
- [BioC] running time: countOverlaps & summarizedOverlaps vs. HTSeq
Nicolas Delhomme
- [BioC] flip strand information in GappedAlignments or GRangesList Object
Nicolas Delhomme
- [BioC] GAGE heatmap pdf question...
Alan Derr
- [BioC] problems generating a gene2GOlist in topGO
António Miguel de Jesus Domingues
- [BioC] Bioconductor Digest, Vol 109, Issue 14
Pan Du
- [BioC] LumiT VST error
Pan Du
- [BioC] fastest way to get a gene list having certain GO term
Duke
- [BioC] fastest way to get a gene list having certain GO term
Duke
- [BioC] fastest way to get a gene list having certain GO term
Duke
- [BioC] IlluminaMousev2.db probe quality information questions?
Mark Dunning
- [BioC] BiomaRt error: server down?
Steffen Durinck
- [BioC] question about biomaRt problem
Steffen Durinck
- [BioC] [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute from BioMart
Steffen Durinck
- [BioC] clusterCt {HTqPCR}
Heidi Dvinge
- [BioC] File formats for high throughput qPCR data
Heidi Dvinge
- [BioC] RobustSpline normalization method applied to agilent data
Heidi Dvinge
- [BioC] question about biomaRt problem
Heidi Dvinge
- [BioC] question about biomaRt problem
Heidi Dvinge
- [BioC] HTqPCR: normalizeCtData
Heidi Dvinge
- [BioC] Question about limma package
Anna Dvorkin
- [BioC] cannot allocate vector for random forest
Salwa Eid
- [BioC] FW: cannot allocate vector for random forest
Salwa Eid
- [BioC] can't allocate vector for random forest
Salwa Eid
- [BioC] error using random forest
Salwa Eid
- [BioC] error in using random forest
Salwa Eid
- [BioC] how can i apply random forest to expression sets of dna microarray
Salwa Eid
- [BioC] how can i apply random forest to expression sets of dna microarray
Salwa Eid
- [BioC] GEOquery Data structure: GSEMatrix
Hendrik Falk
- [BioC] ggplot2: changing the axes appearance
Faryabi, Robert (NIH/NCI) [F]
- [BioC] DESeq vs DEXSeq
Robert M. Flight
- [BioC] DESeq vs DEXSeq
Robert M. Flight
- [BioC] svm (e1071) class weighting in a multi-class problem
Javier Pérez Florido
- [BioC] problems using the latest version of e1071 (svm)
Javier Pérez Florido
- [BioC] optimizing class weights in e1071
Javier Pérez Florido
- [BioC] some questions about lumi package and Illumina arrays
Javier Pérez Florido
- [BioC] some questions about lumi package and Illumina arrays
Javier Pérez Florido
- [BioC] cutoff for NUSE plot in oligo
Richard Friedman
- [BioC] GRENITS won't run with example data
Tyler Funnell
- [BioC] variance and coefficient of variation with edgeR
Miguel Gallach
- [BioC] variance and coefficient of variation with edgeR
Miguel Gallach
- [BioC] edgeR-DeSeq - inconsistency between Variance and Coefficient of Variation?
Miguel Gallach
- [BioC] extracting sequence from a genome
Iain Gallagher
- [BioC] extracting sequence from a genome
Iain Gallagher
- [BioC] edgeR-How to obtain a list of normalized expression values
Iain Gallagher
- [BioC] Rgraphviz and node label placement
Iain Gallagher
- [BioC] Affymetrix Intronic Normalization Control Probes Differentially Expressed?
Paul Geeleher
- [BioC] F p.value.adj missing from write.fit/limma
Pascal Gellert
- [BioC] F p.value.adj missing from write.fit/limma
Pascal Gellert
- [BioC] Finding coding SNPs with predictCoding
Thomas Girke
- [BioC] cummeRbund package function diffData returns no rows for TSS features
Loyal A. Goff
- [BioC] cummeRbund package function diffData returns no rows for TSS features
Loyal A. Goff
- [BioC] setting up the correlation matrix with two channel, dye swapped data . How to deal with Bio and Tech replicates?
Richard Green
- [BioC] A question about MA and RG lists and normalization with two channel agilent arrays.
Richard Green
- [BioC] A question about MA and RG lists and normalization with two channel agilent arrays.
Richard Green
- [BioC] Summing Views on coverage by base
Ivan Gregoretti
- [BioC] pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Groot, Philip de
- [BioC] RobustSpline normalization method applied to agilent data
Priscila Grynberg
- [BioC] RobustSpline normalization method applied to agilent data
Priscila Grynberg
- [BioC] how to get pig genome and for miRNA target scan
José Afonso Guerra-Assunção
- [BioC] Problem with Bimap objects
Lola Guerrero
- [BioC] How can I access to a gene set
Lola Guerrero
- [BioC] How can I access to a gene set
Lola Guerrero
- [BioC] Finding coding SNPs with predictCoding
Alex Gutteridge
- [BioC] Finding coding SNPs with predictCoding
Alex Gutteridge
- [BioC] how to make line graph
Alex Gutteridge
- [BioC] Need immediate help please-BeadSummaryData
Cute Guy
- [BioC] Gviz question
Hahne, Florian
- [BioC] Problems using arrayQualityMetrics
Syed Haider
- [BioC] Problems using arrayQualityMetrics
Syed Haider
- [BioC] problems installing xcms package
Juliet Hannah
- [BioC] arrayQualityMetrics error and question
Daniel Aaen Hansen
- [BioC] arrayQualityMetrics error and question
Daniel Aaen Hansen
- [BioC] arrayQualityMetrics error with MAList
Daniel Aaen Hansen
- [BioC] arrayQualityMetrics error and question
Daniel Aaen Hansen
- [BioC] arrayQualityMetrics error with MAList
Daniel Aaen Hansen
- [BioC] re incomplete analysis in Deseq
Kasper Daniel Hansen
- [BioC] re incomplete analysis in Deseq
Kasper Daniel Hansen
- [BioC] re incomplete analysis in Deseq
Kasper Daniel Hansen
- [BioC] dead or alive vignette in biomaRt? was: question about biomaRt problem
Kasper Daniel Hansen
- [BioC] New to Bioconductor is there a better way?
Kasper Daniel Hansen
- [BioC] ChIPpeakAnno on pathway enrichment
Yuan Hao
- [BioC] snpStats, read.long, alleles in two columns
Liz Hare
- [BioC] snpStats, read.long, alleles in two columns
Liz Hare
- [BioC] question about makeVennDiagram
Ron Hart
- [BioC] Rsamtools installation
Bruce Hayward
- [BioC] Rsamtools installation
Bruce Hayward
- [BioC] beadarray vignette has broken code in R2.14.1?
Henriquez, Nick
- [BioC] homopolymer gap extension penalty in Biostrings
Noah Hoffman
- [BioC] plotting a CA
Susan Holmes
- [BioC] problem creating own org.Ss.eg.db
Hooiveld, Guido
- [BioC] BiomaRt error: server down?
Lisa Hopcroft
- [BioC] BiomaRt error: server down?
Hans-Rudolf Hotz
- [BioC] eset from GEOqury pkg
Jing Huang
- [BioC] eset from GEOqury pkg
Jing Huang
- [BioC] arrayQualityMetrics error with MAList
Wolfgang Huber
- [BioC] arrayQualityMetrics error with MAList
Wolfgang Huber
- [BioC] arrayQualityMetrics package - bugs and errors
Wolfgang Huber
- [BioC] arrayQualityMetrics error and question
Wolfgang Huber
- [BioC] arrayQualityMetrics error with MAList
Wolfgang Huber
- [BioC] re incomplete analysis in Deseq
Wolfgang Huber
- [BioC] re incomplete analysis in Deseq
Wolfgang Huber
- [BioC] EBImage: Negative pixel intensities?!?
Wolfgang Huber
- [BioC] arrayQualityMetrics error and question
Wolfgang Huber
- [BioC] Checking RNAseq DESeq pipeline
Wolfgang Huber
- [BioC] arrayQualityMetrics error and question
Wolfgang Huber
- [BioC] arrayQualityMetrics error and question
Wolfgang Huber
- [BioC] re incomplete analysis in Deseq
Wolfgang Huber
- [BioC] unable to readImage using EBImage package
Wolfgang Huber
- [BioC] question about biomaRt problem
Wolfgang Huber
- [BioC] for running arrayQualityMetrics
Wolfgang Huber
- [BioC] Error by using gpr data with marray
Wolfgang Huber
- [BioC] dead or alive vignette in biomaRt? was: question about biomaRt problem
Wolfgang Huber
- [BioC] dead or alive vignette in biomaRt? was: question about biomaRt problem
Wolfgang Huber
- [BioC] arrayQualityMetrics error with MAList
Wolfgang Huber
- [BioC] Problems using arrayQualityMetrics
Wolfgang Huber
- [BioC] DeSeq Volcano plot- error
Wolfgang Huber
- [BioC] Problems using arrayQualityMetrics
Wolfgang Huber
- [BioC] Problems using arrayQualityMetrics
Wolfgang Huber
- [BioC] Problems using arrayQualityMetrics
Wolfgang Huber
- [BioC] DESeq estimateDispersion options for lower depth miRNA-seq
Wolfgang Huber
- [BioC] Up & Downregulated genes using DESeq
Wolfgang Huber
- [BioC] DESeq- figures on variance estimation
Wolfgang Huber
- [BioC] Problems installing EBImage package
Wolfgang Huber
- [BioC] DESeq estimateDispersion options for lower depth
Wolfgang Huber
- [BioC] DESeq estimateDispersion options for lower depth miRNA-seq
Wolfgang Huber
- [BioC] Error in reading 450k data using lumiMethyR
Khadeeja Ismail
- [BioC] Coverage Question: GenomicRanges
Lakshmanan Iyer
- [BioC] batch effect confounded with condition
Andrew Jaffe
- [BioC] batch effect confounded with condition
Andrew Jaffe
- [BioC] A problem about trimLRPatterns
Harris A. Jaffee
- [BioC] A problem about trimLRPatterns
Harris A. Jaffee
- [BioC] A problem about trimLRPatterns
Harris A. Jaffee
- [BioC] a problem with trimLRPatterns
Harris A. Jaffee
- [BioC] Filtering genes on highest expression before or after LIMMA?
Ekta Jain
- [BioC] Use probesets with highest baseline expression for differntial gene
Ekta Jain
- [BioC] Up & Downregulated genes using DESeq
Ekta Jain
- [BioC] Up & Downregulated genes using DESeq
Ekta Jain
- [BioC] some questions about lumi package and Illumina arrays
Ekta Jain
- [BioC] DNAcopy for CNV in SNP Affy 6.0
Ekta Jain
- [BioC] unable to readImage using EBImage package
Nurdiyanah Jambari
- [BioC] unable to readImage using EBImage package
Nurdiyanah Jambari
- [BioC] unable to readImage using EBImage package
Nurdiyanah Jambari
- [BioC] unable to readImage using EBImage package
Nurdiyanah Jambari
- [BioC] unable to readImage using EBImage package
Nurdiyanah Jambari
- [BioC] unable to readImage using EBImage package
Nurdiyanah Jambari
- [BioC] unable to readImage using EBImage package
Nurdiyanah Jambari
- [BioC] unable to readImage using EBImage package
Nurdiyanah Jambari
- [BioC] Ensembl and refseq genes
chris Jhon
- [BioC] "charm" for MeDIP?
Johnny
- [BioC] How to choose the most 2 different samples in an array experiment
Maciej Jończyk
- [BioC] Please help : RGraphviz installation problem version 1.32 in Ubuntu and Windows 7
Amit Kumar Kashyap
- [BioC] Please help : RGraphviz installation problem version 1.32 in Ubuntu and Windows 7
Amit Kumar Kashyap
- [BioC] Three tenure track assistant professorship openings at Inst. Behavioral Genetics, University of Colorado Boulder
Matthew Keller
- [BioC] adding factors to a data frame from a dataframe
Tom Keller
- [BioC] [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute from BioMart
Rhoda Kinsella
- [BioC] [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute from BioMart
Rhoda Kinsella
- [BioC] readGappedAlignments, package:GenomicRanges
Milica Krunic
- [BioC] saving GRangesList object; conversion to GFF
Milica Krunic
- [BioC] running time: countOverlaps & summarizedOverlaps vs. HTSeq
Milica Krunic
- [BioC] running time: countOverlaps & summarizedOverlaps vs. HTSeq
Milica Krunic
- [BioC] LumiT VST error
Paolo Kunderfranco
- [BioC] can't get degree function to work in graph package
Burak Kutlu
- [BioC] a way to select and filter edge attributes in RCytoscape
Burak Kutlu
- [BioC] RCytoscape not recognizing initiated edge attributes.
Burak Kutlu
- [BioC] RCytoscape not recognizing initiated edge attributes.
Burak Kutlu
- [BioC] problem getting setNodeColorRule from RCytoscape to work
Burak Kutlu
- [BioC] problem getting setNodeColorRule from RCytoscape to work
Burak Kutlu
- [BioC] problem getting setNodeColorRule from RCytoscape to work
Burak Kutlu
- [BioC] problem getting setNodeColorRule from RCytoscape to work
Burak Kutlu
- [BioC] cummeRbund package function diffData returns no rows for TSS features
Asta Laiho
- [BioC] cummeRbund package function diffData returns no rows for TSS features
Asta Laiho
- [BioC] aCGH segmentation with DNAcopy
Emilie Lalonde
- [BioC] creating GRanges and reading BAM files
Michael Lawrence
- [BioC] creating GRanges and reading BAM files
Michael Lawrence
- [BioC] creating GRanges and reading BAM files
Michael Lawrence
- [BioC] Coverage Question: GenomicRanges
Michael Lawrence
- [BioC] rsbml: problem writing a model to file
Michael Lawrence
- [BioC] rsbml: problem writing a model to file
Michael Lawrence
- [BioC] rsbml: problem writing a model to file
Michael Lawrence
- [BioC] rsbml: problem writing a model to file
Michael Lawrence
- [BioC] rtracklayer export.wig variableStep problem
Michael Lawrence
- [BioC] rtracklayer export.wig variableStep problem
Michael Lawrence
- [BioC] rtracklayer export.wig variableStep problem
Michael Lawrence
- [BioC] saving GRangesList object; conversion to GFF
Michael Lawrence
- [BioC] running time: countOverlaps & summarizedOverlaps vs. HTSeq
Michael Lawrence
- [BioC] RangedData Element Metadata
Michael Lawrence
- [BioC] flip strand information in GappedAlignments or GRangesList Object
Michael Lawrence
- [BioC] flip strand information in GappedAlignments or GRangesList Object
Michael Lawrence
- [BioC] Coverage Question: GenomicRanges
Lax
- [BioC] how to set model.matrix for SVA/ComBat
Jeff Leek
- [BioC] how to set model.matrix for SVA/ComBat
Jeff Leek
- [BioC] error in locateVariants for a GRanges object
Lescai, Francesco
- [BioC] error in locateVariants for a GRanges object
Lescai, Francesco
- [BioC] error in locateVariants for a GRanges object
Lescai, Francesco
- [BioC] error in locateVariants for a GRanges object
Lescai, Francesco
- [BioC] error in locateVariants for a GRanges object
Lescai, Francesco
- [BioC] error in locateVariants for a GRanges object
Lescai, Francesco
- [BioC] error in using random forest
Steve Lianoglou
- [BioC] re incomplete analysis in Deseq
Steve Lianoglou
- [BioC] re incomplete analysis in Deseq
Steve Lianoglou
- [BioC] re incomplete analysis in Deseq
Steve Lianoglou
- [BioC] svm (e1071) class weighting in a multi-class problem
Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Steve Lianoglou
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Sunny Yu Liu
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Sunny Yu Liu
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Sunny Yu Liu
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Ann Loraine
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Oliver Lyttleton
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Ma, Xian-Yong
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Ma, Xian-Yong
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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James W. MacDonald
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Joaquin Martinez
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Joaquin Martinez
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Joaquin Martinez
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Joaquin Martinez
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Matthew McCall
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Matthew McCall
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Ali Mohammadian
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Bruce Moran(External)
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Martin Morgan
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Edward Morrissey
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Adriana Munoz
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Adriana Munoz
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Alexandra Muñoz
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Karthik K N
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NDowell
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Valerie Obenchain
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Valerie Obenchain
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Valerie Obenchain
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Valerie Obenchain
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Valerie Obenchain
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Valerie Obenchain
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Valerie Obenchain
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Valerie Obenchain
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Moshe Olshansky
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Georg Otto
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Georg Otto
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Georg Otto
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Georg Otto
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Ou, Jianhong
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Ou, Jianhong
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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Hervé Pagès
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James Perkins
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Paul Theodor Pyl
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Kunbin Qu
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Alpesh Querer
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Alpesh Querer
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Ramasamy, Adaikalavan
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Anand K S Rao
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James F. Reid
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James F. Reid
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James F. Reid
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James F. Reid
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James F. Reid
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Mark Robinson
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Frederick Ross
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Javerjung Sandhu
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Javerjung Sandhu
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Javerjung Sandhu
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Javerjung Sandhu
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Yadav Sapkota
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Yadav Sapkota
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Robert Scharpf
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Vincent Schulz
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Paul Shannon
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Paul Shannon
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Paul Shannon
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Paul Shannon
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Paul Shannon
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Paul Shannon
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Paul Shannon
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Shao, Chunxuan
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Shao, Chunxuan
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Chunxuan Shao
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Wei Shi
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Wei Shi
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Ed Siefker
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Ed Siefker
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Ricardo Silva
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Ricardo Silva
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Ricardo Silva
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Ricardo Silva
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Reema Singh
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Reema Singh
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Gordon K Smyth
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Stefanie
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Stefanie
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Stefanie
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Stefanie
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Dario Strbenac
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Chris Stubben
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Dan Tenenbaum
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Tim Triche, Jr.
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Tim Triche, Jr.
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Tim Triche, Jr.
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Tim Triche, Jr.
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Tim Triche, Jr.
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- [BioC] NOISeq-real input parameters
papori [guest]
- [BioC] question about biomaRt problem
rong [guest]
- [BioC] Summarizing Single-channel Agilent data
axel.klenk at actelion.com
- [BioC] Problem with Bimap objects
axel.klenk at actelion.com
- [BioC] DNA sequence analysis question
andigoni
- [BioC] choosing explanatory variables for linear model in limma
somnath bandyopadhyay
- [BioC] summarizeOverlaps vs countOverlaps
swaraj basu
- [BioC] IRAnges compile error
Francoise.LECOMTE at biogemma.com
- [BioC] Gene-Metabolite correlation network
pankaj borah
- [BioC] Gene-Metabolite correlation network
pankaj borah
- [BioC] Adjacency to network using R
pankaj borah
- [BioC] Adjacency to network using R
pankaj borah
- [BioC] Gene-Metabolite correlation network
pankaj borah
- [BioC] Adjacency to network using R
pankaj borah
- [BioC] Using Anova for microarray data
konika chawla
- [BioC] Using Anova for microarray data
konika chawla
- [BioC] Using Anova for microarray data
konika chawla
- [BioC] Using Anova for microarray data
konika chawla
- [BioC] how to set model.matrix for SVA/ComBat
ying chen
- [BioC] how to set model.matrix for SVA/ComBat
ying chen
- [BioC] LIMMA package - coefficient not estimable
yeeling chong
- [BioC] Updating Package Versions from SVN
chris_utah
- [BioC] design and contrast matrix for limma time series without replicates
shao chunxuan
- [BioC] how to make line graph
Dana.Stanley at csiro.au
- [BioC] how to make line graph
Dana.Stanley at csiro.au
- [BioC] how to make line graph
Dana.Stanley at csiro.au
- [BioC] how to make line graph
Dana.Stanley at csiro.au
- [BioC] plotting a CA
aedin culhane
- [BioC] plotting a CA
aedin culhane
- [BioC] plotting a CA
aedin culhane
- [BioC] plotting a CA
aoife doherty
- [BioC] plotting a CA
aoife doherty
- [BioC] plotting a CA
aoife doherty
- [BioC] plotting a CA
aoife doherty
- [BioC] plotting a ca.
aoife doherty
- [BioC] plotting a ca.
aoife doherty
- [BioC] plotting a CA
aoife doherty
- [BioC] Duplicate probes
J.delasHeras at ed.ac.uk
- [BioC] rsbml: problem writing a model to file
hettling
- [BioC] rsbml: problem writing a model to file
hettling
- [BioC] rsbml: problem writing a model to file
hettling
- [BioC] Error in reading 450k data using lumiMethyR
khadeeja ismail
- [BioC] Genetic coding impact on variant calling
John linux-user
- [BioC] copyCountSegments(fit) failed exomeCopy
John linux-user
- [BioC] copyCountSegments(fit) failed exomeCopy
love
- [BioC] DESeq without replicates, Problem trying to obtain significant hits
Melissa.Martin at lshtm.ac.uk
- [BioC] DeSeq Volcano plot- error
Melissa.Martin at lshtm.ac.uk
- [BioC] DESeq- figures on variance estimation
Melissa.Martin at lshtm.ac.uk
- [BioC] plot axis in pROC
David martin
- [BioC] Checking RNAseq DESeq pipeline
nathalie
- [BioC] A problem about trimLRPatterns
wang peter
- [BioC] A problem about trimLRPatterns
wang peter
- [BioC] how to read empty line in the fastqfile
wang peter
- [BioC] a possible bug of trimLRPatterns
wang peter
- [BioC] a problem with trimLRPatterns
wang peter
- [BioC] how to get pig genome and for miRNA target scan
wang peter
- [BioC] how to get pig genome and for miRNA target scan
wang peter
- [BioC] how to get pig genome and for miRNA target scan
wang peter
- [BioC] an error from ShortRead
wang peter
- [BioC] an error from ShortRead
wang peter
- [BioC] any good R package to scan microRNA target?
wang peter
- [BioC] any good R package to scan microRNA target?
wang peter
- [BioC] any good R package to scan microRNA target?
wang peter
- [BioC] an erro related with RNAStringSet
wang peter
- [BioC] how to map Affymetrix ID to ensemble gene ID
wang peter
- [BioC] how to write fasta file of RNA sequences
wang peter
- [BioC] biomaRt cannot find getAffyArrays function
wang peter
- [BioC] how to map Affymetrix ID to ensemble gene ID
wang peter
- [BioC] how to map Affymetrix ID to ensemble gene ID
wang peter
- [BioC] how to map Affymetrix ID to ensemble gene ID
wang peter
- [BioC] arrayQualityMetrics error with MAList
karen power
- [BioC] batch effect confounded with condition
tefina
- [BioC] batch effect confounded with condition
tefina
- [BioC] batch effect confounded with condition
tefina
- [BioC] Fw: Warning of function "ncbiTaxonomy"
wuchunyan
- [BioC] Warning of function "ncbiTaxonomy"
wuchunyan
- [BioC] error of justRMA() under Linux
cao zongfu
- [BioC] Rgraphiz
zahra / زهرا ghayyomi / قیومی
Last message date:
Sat Mar 31 17:04:59 CEST 2012
Archived on: Sat Mar 31 17:05:16 CEST 2012
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