[BioC] beadarray package: BASH error
Kemal Akat
kakat at mail.rockefeller.edu
Wed Mar 28 02:48:51 CEST 2012
Dear Dan and Mark,
Thank you for taking care of this so quickly.
I appreciate it!
Best regards,
Kemal
On Mar 27, 2012, at 4:42 PM, Dan Tenenbaum wrote:
> Sounds like the fix is on the way.
> Dan
>
>
>
> ---------- Forwarded message ----------
> From: Mark Dunning <Mark.Dunning at cancer.org.uk>
> Date: Tue, Mar 27, 2012 at 12:33 PM
> Subject: RE: [BioC] beadarray package: BASH error
> To: Dan Tenenbaum <dtenenba at fhcrc.org>
>
>
> Hi Dan,
>
> Thanks for the message. I don't have access to the svn right now, but
> I'll fix it tomorrow. It's a trivial fix.
>
> Regards,
>
> Mark
>
> ________________________________________
> From: Dan Tenenbaum [dtenenba at fhcrc.org]
> Sent: 27 March 2012 19:43
> To: kakat at rockefeller.edu
> Cc: bioconductor at r-project.org; Mark Dunning
> Subject: Re: [BioC] beadarray package: BASH error
>
> Hi Kemal,
>
> On Tue, Mar 27, 2012 at 11:35 AM, Kemal Akat [guest]
> <guest at bioconductor.org> wrote:
>>
>> Hi all,
>>
>> When I run the BASH command from the bead array package with my data or the example data from the beadarray package I get the following error (code for the example data):
>>
>> R> library("beadarray")
>> R> library("beadarrayExampleData")
>> R> data(exampleBLData)
>> R> output <- BASH(exampleBLData,array=1:2,useLocs=FALSE)
>> Error in BASH(exampleBLData, array = 1:2, useLocs = FALSE) :
>> BASH can be applied to only one array at a time
>>
>> Does anyone have an idea what is wrong?
>
> Seems like a possible error in the example.
>
> CC'ing the package maintainer here.
> Dan
>
>
>>
>> Thank you!
>> Kemal
>>
>>
>>
>> -- output of sessionInfo():
>>
>> R> sessionInfo()
>> R version 2.15.0 alpha (2012-03-08 r58645)
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] stats graphics grDevices utils datasets methods base
>>
>> other attached packages:
>> [1] beadarrayExampleData_1.0.3 BiocInstaller_1.3.9
>> [3] beadarray_2.5.9 ggplot2_0.9.0
>> [5] Biobase_2.15.4 BiocGenerics_0.1.14
>>
>> loaded via a namespace (and not attached):
>> [1] AnnotationDbi_1.17.27 BeadDataPackR_1.7.1 colorspace_1.1-1
>> [4] DBI_0.2-5 dichromat_1.2-4 digest_0.5.1
>> [7] grid_2.15.0 IRanges_1.13.34 limma_3.11.19
>> [10] MASS_7.3-17 memoise_0.1 munsell_0.3
>> [13] plyr_1.7.1 proto_0.3-9.2 RColorBrewer_1.0-5
>> [16] reshape2_1.2.1 RSQLite_0.11.1 scales_0.2.0
>> [19] stats4_2.15.0 stringr_0.6 tools_2.15.0
>> R>
>>
>> --
>> Sent via the guest posting facility at bioconductor.org.
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
> NOTICE AND DISCLAIMER
> This e-mail (including any attachments) is intended fo...{{dropped:16}}
More information about the Bioconductor
mailing list