[BioC] SRAdb error

[Dan Tenenbaum]

Hi Ayten,

2012/3/22 Ayten YIGITER <yigiter at hacettepe.edu.tr>:
> Hi, I am trying to get the SRAdb package work. I have successfully installed the SRAdb package and then I have got the following error:
>
>
> library(SRAdb)
> sqlfile <- getSRAdbFile()
> URL 'http://watson.nci.nih.gov/~zhujack/SRAmetadb.sqlite.gz' deneniyor
> Content type 'application/octet-stream' length 187043912 bytes (178.4 Mb)
> URL açıldı
> downloaded 178.4 Mb
> Unzipping...
> Error: sqliteNewConnection(drv, ...) :
> RS-DBI driver: (could not connect to dbname:
> unable to open database file"
>
>
> Could you help me at this point?

Can you post the output of R's
sessionInfo()
command?
That will give us the information we need to help you.
Thanks,
Dan


>
> Sincerely yours
>
> Dr. Ayten Yiğiter
> Hacettepe University
> Faculty of Science
> Department of Statistics
> Ankara/Turkey
> Phone: +90 312 2977900
>
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