[BioC] question about biomaRt problem
rong [guest]
guest at bioconductor.org
Wed Mar 7 22:41:38 CET 2012
Hello,
when I use the biomaRt package from R/bioconductor,
there appears a problem:
library("biomaRt")
ensembl=useMart("ensembl",dataset="hsapiens_gene_ensembl")
refseqinds=c("NM_005359","NM_000546")
ipro=getBM(attributes=c("refseq_dna","interpro","interpro_description"),filters="refseq_dna",values=refseqinds,mart=ensembl)
ipro
[1] refseq_dna interpro interpro_description <0 rows> (or 0-length row.names)
Can anyone tell me what's the problem? Are there any other way to retrieve the gene name from refseq gene ID?
-- output of sessionInfo():
> sessionInfo()
R version 2.14.1 (2011-12-22)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] biomaRt_2.10.0
loaded via a namespace (and not attached):
[1] RCurl_1.91-1 tools_2.14.1 XML_3.9-4
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