[BioC] any good R package to scan microRNA target?

[Steve Lianoglou]

Hi,

On Fri, Mar 16, 2012 at 3:00 PM, wang peter <wng.peter at gmail.com> wrote:
> i have microRNA sequences and 3'UTR sequences
> i donot know which R package to scan microRNA target?

Does the string matching functionality provided in Biostrings not get
you where you want to be?

cf. matchPattern and friends.

Of course, miRNA seed matches don't tell the whole (¿any?)) of the
story, so ... are you looking for something more "sophisticated," or?

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact