[BioC] GSVA with entrez ids?
Ed Siefker
ebs15242 at gmail.com
Sun Mar 4 22:47:03 CET 2012
I have an expression set where the featureNames are already human
entrez ids. What annotation package should I use to run GSVA? I
tried org.Hs.eg.db, but I get this error:
> coad_es<-gsva(entrezSet, c2BroadSets, min.sz=10, max.sz=500, verbose=TRUE)$es.obs
Mapping identifiers between gene sets and feature names
Error in GeneSetCollection(lapply(what, mapIdentifiers, to, ...,
verbose = verbose)) :
error in evaluating the argument 'object' in selecting a method for
function 'GeneSetCollection': Error in get(mapName, envir = pkgEnv,
inherits = FALSE) :
object 'org.Hs.egENTREZID' not found
Am I doing something wrong?
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