[BioC] Using the untar() with getGEOSuppFiles()
Ovokeraye Achinike-Oduaran
ovokeraye at gmail.com
Sat Mar 31 11:58:56 CEST 2012
Hi all,
I'm having a difficult time using the untar() after I retrieve the
supp files using getGEOSuppFiles(). I tried it with gse15653 and
gse12643. Both times different errors and I'm not quite sure what else
to do. My goal is to retrieve the associated .cel files. Please help.
Thanks.
-Avoks
> untar("GSE12643/GSE12643_RAW.tar", files = NULL, list = FALSE, exdir = ".",
+ compressed = gzip, extras = NULL, verbose = FALSE,
+ tar = Sys.getenv("TAR"))
Error in rawToChar(block[seq_len(ns)]) :
embedded nul in string:
'\023Ö\030ÛT×\002@Êe4-\024üWÙ&Ù?i0Ú‡"XRâæCGw÷\001\024uA<°§Êœºb•ýó•6…XR\004Q\036¤\v4@ÔYÏ=m\020BéÙ9Ô¸Ÿ²“áŠL€O¹ô”Ð\0>í}]Dw¨®D\036‘'
>
> untar("GSE15653/GSE15653_RAW.tar", files = NULL, list = FALSE, exdir = ".",
+ compressed = gzip, extras = NULL, verbose = FALSE,
+ tar = Sys.getenv("TAR")
+ )
Error in getOct(block, 100, 8) : invalid octal digit
> sessionInfo()
R version 2.14.1 (2011-12-22)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_xxx.1252 LC_CTYPE=English_xxx.1252
[3] LC_MONETARY=English_xxx.1252 LC_NUMERIC=C
[5] LC_TIME=English_xxx.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] affy_1.32.1 GEOquery_2.20.8 Biobase_2.14.0
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