June 2012 Archives by date

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Starting: Fri Jun 1 00:03:24 CEST 2012
Ending: Sat Jun 30 20:35:26 CEST 2012
Messages: 698

• [BioC] LIMMA: plotMDS   Kripa R
• [BioC] MacOS Package installation problems   Paulo Nuin
• [BioC] MacOS Package installation problems   Dan Tenenbaum
• [BioC] Errors Installing Package qrqc under MacOsX   Dan Tenenbaum
• [BioC] MacOS Package installation problems   Dan Tenenbaum
• [BioC] samtools error   Marcus Davy
• [BioC] how to load RangedData for all chromosomes in one tab in UCSC browser using browserView from rtracklayer   Yue Li
• [BioC] MacOS Package installation problems   Dan Tenenbaum
• [BioC] voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)   Kasper Daniel Hansen
• [BioC] edgeR: topTags   Ekta Jain
• [BioC] DESeq estimateDispersions() problem   Nicolas Delhomme
• [BioC] Error in intgroup of arrayQualityMetrics package   Sonal [guest]
• [BioC] arrayQualityMetrics error with MAList   Daniel Aaen Hansen
• [BioC] Is it possible to read in Bluefuse and Agilent files together using read.maimages() function in limma?   Parisa Razaz
• [BioC] Is it possible to read in Bluefuse and Agilent files together using read.maimages() function in limma?   Gordon K Smyth
• [BioC] Is it possible to read in Bluefuse and Agilent files together using read.maimages() function in limma?   Parisa Razaz
• [BioC] frmaTools: error with 'convertPlatform'   Hooiveld, Guido
• [BioC] DESeq estimateDispersions() problem   Steve Lianoglou
• [BioC] how to load RangedData for all chromosomes in one tab in UCSC browser using browserView from rtracklayer   Steve Lianoglou
• [BioC] DESeq estimateDispersions() problem   Nicolas Delhomme
• [BioC] DESeq estimateDispersions() problem   Karl Lundén
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   sheng zhao
• [BioC] BioPAX/SBPAX import for MicroArray Analysis and Hypothesis Building   Oliver Ruebenacker
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   Steve Lianoglou
• [BioC] MacOS Package installation problems   Dan Tenenbaum
• [BioC] HUGO EXON_ID   John linux-user
• [BioC] frmaTools: error with 'convertPlatform'   Matthew McCall
• [BioC] qrqc with error message of "unable to start device PNG" and "unable to open connection to X11 display"?   Sang Chul Choi
• [BioC] HUGO EXON_ID   Marc Carlson
• [BioC] frmaTools: error with 'convertPlatform'   Hooiveld, Guido
• [BioC] frmaTools: error with 'convertPlatform'   Matthew McCall
• [BioC] qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.   Sang Chul Choi
• [BioC] samtools error   Lucia Peixoto
• [BioC] qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.   Vince Buffalo
• [BioC] HUGO EXON_ID   John linux-user
• [BioC] Calculate heterozygosity % using SNP genotype data   Yadav Sapkota
• [BioC] Is it possible to read in Bluefuse and Agilent files together using read.maimages() function in limma?   Gordon K Smyth
• [BioC] XPS package working with Affymetrix GeneChip 1.0 ST at gene level   Jorge Miró [guest]
• [BioC] frmaTools: error with 'convertPlatform'   Matthew McCall
• [BioC] voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)   Gordon K Smyth
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   sheng zhao
• [BioC] edgeR: topTags   KJ Lim
• [BioC] XPS package working with Affymetrix GeneChip 1.0 ST at gene level   Benilton Carvalho
• [BioC] error in hclust function   Alyaa Mahmoud
• [BioC] readGappedAlignmentPairs with multimapping reads   Vedran Franke [guest]
• [BioC] error in hclust function   James F. Reid
• [BioC] error in hclust function   Thomas Girke
• [BioC] XPS package working with Affymetrix GeneChip 1.0 ST at gene level   cstrato
• [BioC] edgeR: summary of differentially expressed genes or tags   KJ Lim
• [BioC] XPS package working with Affymetrix GeneChip 1.0 ST at gene level   cstrato
• [BioC] qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.   Thomas Girke
• [BioC] readGappedAlignmentPairs with multimapping reads   Martin Morgan
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   Martin Morgan
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   sheng zhao
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   Martin Morgan
• [BioC] readGappedAlignmentPairs with multimapping reads   Michael Lawrence
• [BioC] estimateLogicle from flowCore produces \"Error in eval(expr, envir, enclos) : object \'tr\' not found\" error   Juliet [guest]
• [BioC] estimateLogicle from flowCore produces \"Error in eval(expr, envir, enclos) : object \'tr\' not found\" error   Juliet [guest]
• [BioC] estimateLogicle from flowCore produces \"Error in eval(expr, envir, enclos) : object \'tr\' not found\" error   Martin Morgan
• [BioC] pairwiseAlignment of PDB files to canonical protein structure   Gregory Ryslik
• [BioC] GWAS with Affymetrix SNP 6.0   David Hervás
• [BioC] GWAS with Affymetrix SNP 6.0   Vincent Carey
• [BioC] GWAS with Affymetrix SNP 6.0   Fred Boehm
• [BioC] edgeR: summary of differentially expressed genes or tags   Gordon K Smyth
• [BioC] edgeR: summary of differentially expressed genes or tags   Gordon K Smyth
• [BioC] oligo and pdInfoBuilder   Simon Melov
• [BioC] oligo and pdInfoBuilder   Vincent Carey
• [BioC] edgeR: summary of differentially expressed genes or tags   KJ Lim
• [BioC] Rsamtools yieldTabix Skips Comment Lines   Dario Strbenac
• [BioC] edgeR: summary of differentially expressed genes or tags   Gordon K Smyth
• [BioC] XPS package working with Affymetrix GeneChip 1.0 ST at gene level   Groot, Philip de
• [BioC] oligo: error in crlmm function   Javier Pérez Florido
• [BioC] Replacing commas with new lines in R   Ovokeraye Achinike-Oduaran
• [BioC] Replacing commas with new lines in R   Sean Davis
• [BioC] oligo: error in crlmm function   Benilton Carvalho
• [BioC] Replacing commas with new lines in R   Ovokeraye Achinike-Oduaran
• [BioC] GWAS with Affymetrix SNP 6.0   David Hervás
• [BioC] Gene list annotation   Fleur [guest]
• [BioC] Gene list annotation   Sean Davis
• [BioC] Rsamtools yieldTabix Skips Comment Lines   Martin Morgan
• [BioC] FW: Gene list annotation   Stéphanie haaaaaaaa
• [BioC] Unable to perform GCRMA/RMA with cdf file 'mogene11stv1mmentrezgcdf'   Trent Simmons
• [BioC] FW: Gene list annotation   Sean Davis
• [BioC] Unable to perform GCRMA/RMA with cdf file 'mogene11stv1mmentrezgcdf'   James W. MacDonald
• [BioC] Unable to perform GCRMA/RMA with cdf file 'mogene11stv1mmentrezgcdf'   Trent Simmons
• [BioC] Unable to perform GCRMA/RMA with cdf file 'mogene11stv1mmentrezgcdf'   Hooiveld, Guido
• [BioC] Unable to perform GCRMA/RMA with cdf file 'mogene11stv1mmentrezgcdf'   James W. MacDonald
• [BioC] Unable to perform GCRMA/RMA with cdf file 'mogene11stv1mmentrezgcdf'   Trent Simmons
• [BioC] DEXSeq package: Error in DEXSeqHTML   Ahmet ZEHIR
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   Martin Morgan
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   Dan Tenenbaum
• [BioC] oligo and pdInfoBuilder   Simon Melov
• [BioC] Rsubread crashes in 32bit linux   Robert Castelo
• [BioC] [ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9   sheng zhao
• [BioC] DEXSeq package: Error in DEXSeqHTML   Alejandro Reyes
• [BioC] GOSemSim comparison between species   Katharine Coyte
• [BioC] Bioconductor package cellHTS2   Joseph Barry
• [BioC] BiomaRt query error   Ovokeraye Achinike-Oduaran
• [BioC] BiomaRt Query error Edited   Ovokeraye Achinike-Oduaran
• [BioC] edgeR Error in `colnames<-`(`*tmp*`, value = c(\"1\", \"2\", \"3\", \"4\")) :   Senhao Zhang [guest]
• [BioC] DEXSeq package: Error in DEXSeqHTML   Ahmet ZEHIR
• [BioC] DEXSeq package: Error in DEXSeqHTML   Ahmet ZEHIR
• [BioC] Rsubread crashes in 32bit linux   Dan Du
• [BioC] DEXSeq package: Error in DEXSeqHTML   Alejandro Reyes
• [BioC] predicting transcription factors   Jing Huang
• [BioC] predicting transcription factors   Paul Shannon
• [BioC] predicting transcription factors   Jing Huang
• [BioC] predicting transcription factors   Jing Huang
• [BioC] qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.   Sang Chul Choi
• [BioC] qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.   Vince S. Buffalo
• [BioC] Increasing Stringency of GRanges Overlap   Kurinji Pandiyan
• [BioC] Increasing Stringency of GRanges Overlap   Tim Triche, Jr.
• [BioC] cummeRbund errors   Wang, Li
• [BioC] "graphite" Biocarta 'native' graphs different from Biocarta web site?   Hamid Bolouri
• [BioC] BioC2012: upcoming deadlines   Martin Morgan
• [BioC] Rsubread crashes in 32bit linux   Wei Shi
• [BioC] Rsubread crashes in 32bit linux   Wei Shi
• [BioC] minfi - missing values   haroon naeem
• [BioC] Rsubread crashes in 32bit linux   Dan Du
• [BioC] Rsubread crashes in 32bit linux   Peter Sørensen (HAG)
• [BioC] Rsubread crashes in 32bit linux   Wei Shi
• [BioC] Rsubread crashes in 32bit linux   Wei Shi
• [BioC] Rsubread crashes in 32bit linux   Dan Du
• [BioC] Rsubread crashes in 32bit linux   Peter Sørensen (HAG)
• [BioC] Rsubread crashes in 32bit linux   Wei Shi
• [BioC] error in hclust function   Alyaa Mahmoud
• [BioC] pvclust error   Alyaa Mahmoud
• [BioC] makeTranscriptDbFromBiomart error   Stefanie
• [BioC] Question about ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] shortread quality   David martin
• [BioC] Uploading BED file: rtracklayer   swaraj basu
• [BioC] Uploading BED file: rtracklayer   Michael Lawrence
• [BioC] Uploading BED file: rtracklayer   Michael Lawrence
• [BioC] qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.   Sang Chul Choi
• [BioC] qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.   Vince S. Buffalo
• [BioC] Question about ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] shortread quality   Martin Morgan
• [BioC] Question about ChIPpeakAnno   Petros Kolovos
• [BioC] Question about ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] Question about ChIPpeakAnno   Petros Kolovos
• [BioC] makeTranscriptDbFromBiomart error   Steve Lianoglou
• [BioC] shortread quality   Martin Morgan
• [BioC] Mapping genes to their gene sets for GSEA   Yoo, Seungyeul
• [BioC] readGappedAlignmentPairs with multimapping reads   Hervé Pagès
• [BioC] readGappedAlignmentPairs with multimapping reads   Hervé Pagès
• [BioC] Amplicon and exon level read counts and GC content   Yu Chuan Tai
• [BioC] base-specific read counts   Yu Chuan Tai
• [BioC] shortread quality   David martin
• [BioC] Uploading BED file: rtracklayer   swaraj basu
• [BioC] problem about set operation and computation after split   bestbird7788 [guest]
• [BioC] makeTranscriptDbFromBiomart error   Stefanie Tauber
• [BioC] Uploading BED file: rtracklayer   Michael Lawrence
• [BioC] qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.   Sang Chul Choi
• [BioC] gplots error   German Gonzalez [guest]
• [BioC] base-specific read counts   Martin Morgan
• [BioC] Amplicon and exon level read counts and GC content   Martin Morgan
• [BioC] Question about ChIPpeakAnno   Martin Morgan
• [BioC] TEQC package isssue with chromosome format   nathalie
• [BioC] Question about locked environments   Zadeh, Jenny Drnevich
• [BioC] makeTranscriptDbFromBiomart error   Steve Lianoglou
• [BioC] problem about set operation and computation after split   Steve Lianoglou
• [BioC] Amplicon and exon level read counts and GC content   Yu Chuan Tai
• [BioC] base-specific read counts   Yu Chuan Tai
• [BioC] base-specific read counts   Sean Davis
• [BioC] base-specific read counts   Yu Chuan Tai
• [BioC] base-specific read counts   Sean Davis
• [BioC] makeTranscriptDbFromBiomart error   Stefanie Tauber
• [BioC] Amplicon and exon level read counts and GC content   Martin Morgan
• [BioC] makeTranscriptDbFromBiomart error   Marc Carlson
• [BioC] Changing the Scale of GViz Data track   Kurinji Pandiyan
• [BioC] Changing the Scale of GViz Data track   Steffen Durinck
• [BioC] gplots error   Dan Tenenbaum
• [BioC] gplots error   Germán González
• [BioC] makeTranscriptDbFromBiomart error   Marc Carlson
• [BioC] Question about locked environments   Martin Morgan
• [BioC] DEGraph graph format?   Hamid Bolouri
• [BioC] Rsubread crashes in 32bit linux   Wei Shi
• [BioC] base-specific read counts   Yu Chuan Tai
• [BioC] base-specific read counts   Yu Chuan Tai
• [BioC] Rsubread crashes in 32bit linux   Dan Du
• [BioC] Rsubread crashes in 32bit linux   Wei Shi
• [BioC] Amplicon and exon level read counts and GC content   Yu Chuan Tai
• [BioC] Rsubread crashes in 32bit linux   Robert Castelo
• [BioC] arrayQualityMetrics() doesn't work for one-color non Affy arrays   Alogmail2 at aol.com
• [BioC] base-specific read counts   Sean Davis
• [BioC] Rsubread crashes in 32bit linux   Wei Shi
• [BioC] Amplicon and exon level read counts and GC content   Martin Morgan
• [BioC] batch effects 450K   Femke [guest]
• [BioC] batch effects 450K   Teschendorff, Andrew
• [BioC] ChIPpeakAnno   Emily P [guest]
• [BioC] batch effects 450K   Brent Pedersen
• [BioC] DEGraph graph format?   Dan Tenenbaum
• [BioC] GOSemSim comparison between species   Dan Tenenbaum
• [BioC] ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] DEGraph graph format?   laurent jacob
• [BioC] batch effects 450K   Tim Triche, Jr.
• [BioC] DEGraph graph format?   Hamid Bolouri
• [BioC] output from "getChipInfo" prevents Illumina ProbeID conversion   Pan Du
• [BioC] DEGraph graph format?   laurent jacob
• [BioC] Working with GERP scores   Paul Leo
• [BioC] BiomaRt Query error Edited   Marc Carlson
• [BioC] (no subject)   Rimple Patel
• [BioC] How to get TAIR identifiers corresponding to sequences of a non model species   Elie M. RAHERISON
• [BioC] base-specific read counts   Yu Chuan Tai
• [BioC] Amplicon and exon level read counts and GC content   Yu Chuan Tai
• [BioC] Amplicon and exon level read counts and GC content   Martin Morgan
• [BioC] arrayQualityMetrics() doesn't work for one-color non Affy arrays   Wolfgang Huber
• [BioC] Error in intgroup of arrayQualityMetrics package   Wolfgang Huber
• [BioC] DEGraph graph format?   Oliver Ruebenacker
• [BioC] base-specific read counts   Sean Davis
• [BioC] base-specific read counts   Yu Chuan Tai
• [BioC] shangao   wang peter
• [BioC] SRAdb: is the database missing some entries?   Ben Woodcroft
• [BioC] reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]   Gordon K Smyth
• [BioC] DEGraph graph format?   laurent jacob
• [BioC] reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]   Wolfgang Huber
• [BioC] SRAdb: is the database missing some entries?   Sean Davis
• [BioC] DEGraph graph format?   Oliver Ruebenacker
• [BioC] DEGraph graph format?   laurent jacob
• [BioC] DEGraph graph format?   Oliver Ruebenacker
• [BioC] [JOB] NGS and computational genomics postdoc positions   mattia pelizzola
• [BioC] Kegg pathways overlay with log fold change values   Amit Kumar Kashyap
• [BioC] Kegg pathways overlay with log fold change values   alessandro brozzi
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix   suparna mitra
• [BioC] Kegg pathways overlay with log fold change values   Paul Shannon
• [BioC] makeTranscriptDbFromBiomart error   Stefanie
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix   suparna mitra
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix   suparna mitra
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix   Richard Friedman
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix   suparna mitra
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix   cstrato
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix   James W. MacDonald
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix NEGATIVE CONTROL PROBES   Richard Friedman
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix   suparna mitra
• [BioC] statistics from snpStats objects   james power
• [BioC] gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix NEGATIVE CONTROL PROBES   James W. MacDonald
• [BioC] SRAdb: is the database missing some entries?   Cook, Malcolm
• [BioC] Kegg pathways overlay with log fold change values   Amit Kumar Kashyap
• [BioC] Question regarding cellhts2 output   Joseph Barry
• [BioC] Question regarding cellhts2 output   Joseph Barry
• [BioC] DEGraph graph format?   laurent jacob
• [BioC] Question about MCRestimate   ZHENG FU
• [BioC] get genomic location   mali salmon
• [BioC] processed gene expression datasets   Alyaa Mahmoud
• [BioC] processed gene expression datasets   Sean Davis
• [BioC] restrict transcriptDB object to "known" genes   Stefanie
• [BioC] restrict transcriptDB object to "known" genes   Stefanie
• [BioC] processed gene expression datasets   Alyaa Mahmoud
• [BioC] Changing results depending on context   January Weiner
• [BioC] importing iScan data into beadarray   Johnson, Craig
• [BioC] processed gene expression datasets   Alyaa Mahmoud
• [BioC] Changing results depending on context   James W. MacDonald
• [BioC] Bioconductor IT Security polici   William Lappner [guest]
• [BioC] Limma-include interaction term   Yao Chen
• [BioC] design matrix Limma design for paired t-test   Ingrid Mercier
• [BioC] Question about locked environments   Zadeh, Jenny Drnevich
• [BioC] Bioconductor IT Security polici   Martin Morgan
• [BioC] Question about sampling   Guido Leoni
• [BioC] Limma-include interaction term   James W. MacDonald
• [BioC] Limma-include interaction term   Yao Chen
• [BioC] Limma-include interaction term   James W. MacDonald
• [BioC] Limma-include interaction term   Yao Chen
• [BioC] Limma-include interaction term   James W. MacDonald
• [BioC] where to find a host server with R   Xiaokuan Wei
• [BioC] Wheat annotation   Sam McInturf [guest]
• [BioC] Max Common Subgraph   HIMANSHU MITTAL
• [BioC] restrict transcriptDB object to "known" genes   Tim Triche, Jr.
• [BioC] Max Common Subgraph   Paul Shannon
• [BioC] SRAdb: is the database missing some entries?   Ben Woodcroft
• [BioC] design matrix Limma design for paired t-test   Belinda Phipson
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Andreas Heider
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Andreas Heider
• [BioC] restrict transcriptDB object to "known" genes   Stefanie Tauber
• [BioC] paired analysis in RNA Seq data using DESeq   Natasha Sahgal
• [BioC] TEQC package very slow   nathalie
• [BioC] design matrix Limma design for paired t-test   Ingrid Mercier
• [BioC] get genomic location   Valerie Obenchain
• [BioC] Wheat annotation   James W. MacDonald
• [BioC] Calculate heterozygosity % using SNP genotype data   Valerie Obenchain
• [BioC] get genomic location   Michael Lawrence
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   James W. MacDonald
• [BioC] TEQC package very slow   nathalie
• [BioC] understanding multiples matches between probesets and entrezgene (biomart)   Juliet Hannah
• [BioC] BioC2012 deadlines   Valerie Obenchain
• [BioC] Wheat annotation   Oliver Ruebenacker
• [BioC] understanding multiples matches between probesets and entrezgene (biomart)   James W. MacDonald
• [BioC] Wheat annotation   James W. MacDonald
• [BioC] understanding multiples matches between probesets and entrezgene (biomart)   Steve Lianoglou
• [BioC] Question about lumiMethyN() in lumi package   Pan Du
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   cstrato
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Andreas Heider
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   cstrato
• [BioC] Wheat annotation   Sam McInturf
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Benilton Carvalho
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Benilton Carvalho
• [BioC] Scaling color range of heatmap.2 with scaled row option   Yoo, Seungyeul
• [BioC] reading single channel Agilent data with limma [was arrayQualityMetrics d...   Alogmail2 at aol.com
• [BioC] using Limma to read 2-channel dye-swap in Agilent scanner   Neta
• [BioC] reading single channel Agilent data with limma [was arrayQualityMetrics d...   Gordon K Smyth
• [BioC] factorial designs in limma   Michael Rooney
• [BioC] Fwd: FW: plgem   Norman Pavelka
• [BioC] design matrix Limma design for paired t-test   Moshe Olshansky
• [BioC] [R] where to find a host server with R   Ricardo Pietrobon
• [BioC] reading single channel Agilent data with limma [was arrayQualityMetrics d...   Alogmail2 at aol.com
• [BioC] Is there an R package to export genotype data to PED /MAP files?   Javier Pérez Florido
• [BioC] FW: plgem   Olli Kannaste
• [BioC] AgiMicroRna and Replicates   Karthik K N
• [BioC] AgiMicroRna and Replicates   Richard Friedman
• [BioC] AgiMicroRna and Replicates   Karthik K N
• [BioC] AgiMicroRna and Replicates   Richard Friedman
• [BioC] Biostring: print sequence alignment to file   Martin Preusse
• [BioC] BioPAX parsing   Martin Preusse
• [BioC] AgiMicroRna and Replicates   Steve Lianoglou
• [BioC] AgiMicroRna and Replicates   Karthik K N
• [BioC] AgiMicroRna and Replicates   Karthik K N
• [BioC] some help requested for constructing an appropriate design matrix in LIMMA   steven segbroek
• [BioC] glmFit options in edgeR not passed to mglmLS?   Davis, Wade
• [BioC] How many tests do you need to moderate the t-statistic in Limma   Richard Friedman
• [BioC] [ArrayExpress] Multiple keyword search via queryAE   Skanda [guest]
• [BioC] problems with annotation package (error in AnnotationDbi v1.18.1 ?)   Samuel Wuest
• [BioC] Can someone recommend a package for SNP cluster analysis of Fluidigm microarrays?   Hans Thompson
• [BioC] About Rsubread   Lucia Spangenberg [guest]
• [BioC] [Bioc-devel] flowCore 1.22.0 broken for some FCS files (which it previously read without errors)   Jiang, Mike
• [BioC] How many tests do you need to moderate the t-statistic in Limma   Belinda Phipson
• [BioC] using Limma to read 2-channel dye-swap in Agilent scanner   Belinda Phipson
• [BioC] About Rsubread   Wei Shi
• [BioC] FW: plgem   Norman Pavelka
• [BioC] RE : Error in intgroup of arrayQualityMetrics package   Sonal Bakiwala [guest]
• [BioC] 2012 Bioconductor European Developers' Workshop - annoucement   Mark Robinson
• [BioC] Microarray experiment design issues   Ali Tofigh
• [BioC] FW: plgem   Olli Kannaste
• [BioC] design matrix Limma design for paired t-test   Ingrid Mercier
• [BioC] FW: plgem   Norman Pavelka
• [BioC] Microarray experiment design issues   David Westergaard
• [BioC] Microarray experiment design issues   Wolfgang Huber
• [BioC] RE : Error in intgroup of arrayQualityMetrics package   Wolfgang Huber
• [BioC] charm package using MEDIP protocol   Tarca, Adi
• [BioC] BioPAX parsing   Oliver Ruebenacker
• [BioC] cummeRbund errors   Loyal Goff
• [BioC] Microarray experiment design issues   Ali Tofigh
• [BioC] Is there a package that maps short sequence to exon?   ying chen
• [BioC] BioPAX parsing   Martin Preusse
• [BioC] How to print out normalized Cy5 and Cy3 signals   JiangMei
• [BioC] BCV increases with an increasing counts per million in RNAseq (edgeR)   gowtham
• [BioC] BioPAX parsing   Oliver Ruebenacker
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] Is there a package that maps short sequence to exon?   Martin Morgan
• [BioC] Wheat annotation   Marc Carlson
• [BioC] problems with annotation package (error in AnnotationDbi v1.18.1 ?)   Marc Carlson
• [BioC] BCV increases with an increasing counts per million in RNAseq (edgeR)   gowtham
• [BioC] BioPAX parsing   Paul Shannon
• [BioC] PROBLEM LOADING THE covdesc FILE IN SIMPLEAFFY   Garcia Orellana,Miriam
• [BioC] BioPAX parsing   Vincent Carey
• [BioC] Problem in filtering of single color microarrray data using LIMMA   Muralidharan V
• [BioC] BioPAX parsing   Oliver Ruebenacker
• [BioC] Access to Source Codes of Packges   Karthik K N
• [BioC] biomaRt installation error ??   Alyaa Mahmoud
• [BioC] biomaRt installation error ??   David Westergaard
• [BioC] Access to Source Codes of Packges   Karthik K N
• [BioC] Access to Source Codes of Packges   Sean Davis
• [BioC] Access to Source Codes of Packges   Sean Davis
• [BioC] biomaRt installation error ??   Alyaa Mahmoud
• [BioC] BioPAX parsing   Michael Lawrence
• [BioC] BioPAX parsing   Oliver Ruebenacker
• [BioC] Question regarding cellhts2 output   maziz at tgen.org
• [BioC] Question regarding cellhts2 output   maziz at tgen.org
• [BioC] (no subject)   suri ghani
• [BioC] down-expression and high-expression in single cell + amplification   papori [guest]
• [BioC] down-expression and high-expression in single cell + amplification   Tim Triche, Jr.
• [BioC] Question regarding cellhts2 output   Wolfgang Huber
• [BioC] Getting the start and end positions of a list of genes   Josh [guest]
• [BioC] Getting the start and end positions of a list of genes   Vincent Carey
• [BioC] Problem in filtering of single color microarrray data using LIMMA   Belinda Phipson
• [BioC] How to print out normalized Cy5 and Cy3 signals   Belinda Phipson
• [BioC] some help requested for constructing an appropriate design matrix in LIMMA   Belinda Phipson
• [BioC] down-expression and high-expression in single cell + amplification   Dror Hibsh
• [BioC] nearest() for GRanges   Oleg Mayba
• [BioC] down-expression and high-expression in single cell + amplification   Dror Hibsh
• [BioC] design matrix Limma design for paired t-test   Moshe Olshansky
• [BioC] down-expression and high-expression in single cell + amplification   Simon Anders
• [BioC] package ‘hugene10stv1.r3cdf’ or ‘hugene10stv1’ is not available   suparna mitra
• [BioC] package ‘hugene10stv1.r3cdf’ or ‘hugene10stv1’ is not available   Hooiveld, Guido
• [BioC] (no subject)   Rimple Patel
• [BioC] Annotation Database for Agilent 8x60K Human Gene Expression Arrays   Karthik K N
• [BioC] RE : Error in intgroup of arrayQualityMetrics package   Tim Rayner
• [BioC] affyPara - rmaPara fails using cdfname   Wetzels, Yves [JRDBE Extern]
• [BioC] package ‘hugene10stv1.r3cdf’ or ‘hugene10stv1’ is not available   suparna mitra
• [BioC] Opportunity to Build a Biostatistic/Bioinformatic Group   Laurie Irwin [guest]
• [BioC] down-expression and high-expression in single cell + amplification   Dror Hibsh
• [BioC] Getting the start and end positions of a list of genes   Cook, Malcolm
• [BioC] Best package or code to filter Affymetrix probes by present calls??   Garcia Orellana,Miriam
• [BioC] nearest() for GRanges   Martin Morgan
• [BioC] Best package or code to filter Affymetrix probes by present calls??   Garcia Orellana,Miriam
• [BioC] interpreting DEXSeq output   Elena Sorokin
• [BioC] Best package or code to filter Affymetrix probes by present calls??   James W. MacDonald
• [BioC] nearest() for GRanges   Cook, Malcolm
• [BioC] Best package or code to filter Affymetrix probes by present calls??   Iain Gallagher
• [BioC] flowCore 1.22.0 broken for some FCS files   Josef Spidlen
• [BioC] interpreting DEXSeq output   Alejandro Reyes
• [BioC] Best package or code to filter Affymetrix probes by present calls??   Djork-Arné Clevert
• [BioC] C.V function in Agi4x44PreProcess   Muralidharan V
• [BioC] merge the two cards in a single dataset   alessandro brozzi
• [BioC] Newbie methylation and stats question   Gustavo Fernández Bayón
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] changes to RBGL   Vincent Carey
• [BioC] Newbie methylation and stats question   Mark Robinson
• [BioC] Newbie methylation and stats question   Tim Triche, Jr.
• [BioC] [Engineers for ensemblgenomes.org #251937] BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute from BioMart   Cook, Malcolm
• [BioC] Newbie methylation and stats question   Yao Chen
• [BioC] Newbie methylation and stats question   Gustavo Fernández Bayón
• [BioC] Newbie methylation and stats question   Gustavo Fernández Bayón
• [BioC] Newbie methylation and stats question   Gustavo Fernández Bayón
• [BioC] design matrix edge R pairwise comparison at different timepoints after infection with replicates   Kaat De Cremer
• [BioC] Can I do model comparison with type III ANOVA?   Yonggan Wu
• [BioC] How to print out normalized Cy5 and Cy3 signals   Yong Li
• [BioC] Using limma for quantitative proteomics data   Yong Li
• [BioC] Newbie methylation and stats question   Tim Triche, Jr.
• [BioC] Newbie methylation and stats question   Tim Triche, Jr.
• [BioC] Newbie methylation and stats question   Tim Triche, Jr.
• [BioC] Newbie methylation and stats question   Yao Chen
• [BioC] Using limma for quantitative proteomics data   Aaron Mackey
• [BioC] Newbie methylation and stats question   Tim Triche, Jr.
• [BioC] Annotation Database for Agilent 8x60K Human Gene Expression Arrays   Marc Carlson
• [BioC] Gviz plot dimensions   Murat Tasan
• [BioC] Using limma for quantitative proteomics data   Yong Li
• [BioC] Using limma for quantitative proteomics data   Richard Friedman
• [BioC] Using limma for quantitative proteomics data   Tim Triche, Jr.
• [BioC] Using limma for quantitative proteomics data   Aaron Mackey
• [BioC] Differential drug effect on clinical groups   Dave Canvhet
• [BioC] RnaSeqTutorial Package   spf385 [guest]
• [BioC] Using limma for quantitative proteomics data   Tim Triche, Jr.
• [BioC] RnaSeqTutorial Package   Steve Lianoglou
• [BioC] Best package or code to filter Affymetrix probes by present calls??   Garcia Orellana,Miriam
• [BioC] DESeq and contrasts   Joshua Udall
• [BioC] Using limma for quantitative proteomics data   Tim Triche, Jr.
• [BioC] (no subject)   Rimple Patel
• [BioC] Using limma for quantitative proteomics data   Bernd Fischer
• [BioC] Newbie methylation and stats question   Gustavo Fernández Bayón
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] Best package or code to filter Affymetrix probes by present calls??   Djork-Arné Clevert
• [BioC] Non-Specific Filtering with "nsFilter" Question   zeynep özkeserli
• [BioC] WGCNA chooseTopHubInEachModule function   Sudeep Sahadevan
• [BioC] HTqPCR problem   David martin
• [BioC] Problems installing EBImage   Visser, V, Dr <vernonvisser at sun.ac.za>
• [BioC] boxplot/histograms on preprocessed SNP affy data with crlmm package   Javier Pérez Florido
• [BioC] HTqPCR problem   wenhuo hu
• [BioC] .wig files for strand-specific paired-end RNA-Seq   Igor Ulitsky [guest]
• [BioC] boxplot/histograms on preprocessed SNP affy data with crlmm package   Benilton Carvalho
• [BioC] HTqPCR problem   Heidi Dvinge
• [BioC] HTqPCR problem   David martin
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] .wig files for strand-specific paired-end RNA-Seq   Michael Lawrence
• [BioC] .wig files for strand-specific paired-end RNA-Seq   Igor Ulitsky
• [BioC] HTqPCR problem   Heidi Dvinge
• [BioC] error in dmrFinder of charm package when there is one sample per group   Tarca, Adi
• [BioC] Differential drug effect on clinical groups   James W. MacDonald
• [BioC] WGCNA chooseTopHubInEachModule function   Tim Triche, Jr.
• [BioC] BioC package for miRNA target scanning (or displaying results from databases)   Karthik K N
• [BioC] Eleonore Gravier/CURIE a quitté l'Institut Curie   eleonore.gravier at curie.net
• [BioC] Can I do model comparison with type III ANOVA?   James W. MacDonald
• [BioC] HTqPCR problem   David martin
• [BioC] .wig files for strand-specific paired-end RNA-Seq   Michael Lawrence
• [BioC] interpreting DEXSeq output   Elena Sorokin
• [BioC] Non-Specific Filtering with "nsFilter" Question   James W. MacDonald
• [BioC] interpreting DEXSeq output   Tim Triche, Jr.
• [BioC] xps scheme building   Iain Gallagher
• [BioC] Non-Specific Filtering with "nsFilter" Question   zeynep özkeserli
• [BioC] Differential drug effect on clinical groups   Dave Canvhet
• [BioC] WGCNA chooseTopHubInEachModule function   Horvath, Steve
• [BioC] Non-Specific Filtering with "nsFilter" Question   James W. MacDonald
• [BioC] Differential drug effect on clinical groups   James W. MacDonald
• [BioC] WGCNA chooseTopHubInEachModule function   Sudeep Sahadevan
• [BioC] nearest() for GRanges   Valerie Obenchain
• [BioC] Best package or code to filter Affymetrix probes by present calls??   Garcia Orellana,Miriam
• [BioC] RE : Error in intgroup of arrayQualityMetrics package   Wolfgang Huber
• [BioC] xps scheme building   cstrato
• [BioC] SRAdb: is the database missing some entries? (Ben Woodcroft)   Jack Zhu
• [BioC] DESeq and contrasts   Gordon K Smyth
• [BioC] nearest() for GRanges   Cook, Malcolm
• [BioC] nearest() for GRanges   Oleg Mayba
• [BioC] Problems installing EBImage   Gregoire Pau
• [BioC] design matrix edge R pairwise comparison at different time points after infection with replicates   Kaat De Cremer
• [BioC] Coverage on GappedAlignmentPairs   Lakshmanan Iyer
• [BioC] estimateDispersions in DESeq   Flavia Nunes
• [BioC] Printing arrayQualityMetrics report   David Westergaard
• [BioC] error in dmrFinder of charm package when there is one sample per group   P. Murakami
• [BioC] BioC package for miRNA target scanning (or displaying results from databases)   James F.Reid
• [BioC] using disjoin() for copy number as Rle() columns of a SummarizedExperiment   Tim Triche, Jr.
• [BioC] BSgenome packages for new UCSC rn5 and galGal4 assemblies   Hervé Pagès
• [BioC] Printing arrayQualityMetrics report   Wolfgang Huber
• [BioC] estimateDispersions in DESeq   Wolfgang Huber
• [BioC] edgeR: calcNormFactors question   gowtham
• [BioC] edgeR: calcNormFactors question   gowtham
• [BioC] edgeR: calcNormFactors question   gowtham
• [BioC] edgeR: calcNormFactors question   Belinda Phipson
• [BioC] BSgenome packages for new UCSC rn5 and galGal4 assemblies   Kasper Daniel Hansen
• [BioC] BSgenome packages for new UCSC rn5 and galGal4 assemblies   Tim Triche, Jr.
• [BioC] BSgenome packages for new UCSC rn5 and galGal4 assemblies   Kasper Daniel Hansen
• [BioC] using disjoin() for copy number as Rle() columns of a SummarizedExperiment   Michael Lawrence
• [BioC] BSgenome packages for new UCSC rn5 and galGal4 assemblies   Hervé Pagès
• [BioC] SRAdb: is the database missing some entries? (Ben Woodcroft)   Ben Woodcroft
• [BioC] using disjoin() for copy number as Rle() columns of a SummarizedExperiment   Tim Triche, Jr.
• [BioC] Printing arrayQualityMetrics report   James F. Reid
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] edgeR: calcNormFactors question   gowtham
• [BioC] re-shape table for HtqPCR   Heidi Dvinge
• [BioC] edgeR: calcNormFactors question   gowtham
• [BioC] edgeR: calcNormFactors question   Mark Robinson
• [BioC] design matrix edge R pairwise comparison at different time points after infection with replicates   Mark Robinson
• [BioC] edgeR: calcNormFactors question   gowtham
• [BioC] Printing arrayQualityMetrics report   Wolfgang Huber
• [BioC] Gviz: Error plotting C.elegans ideogram   Michael Dondrup
• [BioC] Coverage on GappedAlignment Pairs   Lakshmanan Iyer
• [BioC] design matrix edge R pairwise comparison at different time points after infection with replicates   Kaat De Cremer
• [BioC] readGapppedAlignmentpairs questions   Lakshmanan Iyer
• [BioC] [Limma] Calculate the relation between mRNA and miRNA   Yao Chen
• [BioC] readGapppedAlignmentpairs questions   Wei Shi
• [BioC] some help requested for constructing an appropriate design matrix in LIMMA   steven segbroek
• [BioC] readGapppedAlignmentpairs questions   Hervé Pagès
• [BioC] How to generate bar files?   Susan Wilson
• [BioC] Biostring: print sequence alignment to file   Hervé Pagès
• [BioC] readGapppedAlignmentpairs questions   Lakshmanan Iyer
• [BioC] nearest() for GRanges   Valerie Obenchain
• [BioC] nearest() for GRanges   Cook, Malcolm
• [BioC] [Limma] Calculate the relation between mRNA and miRNA   Belinda Phipson
• [BioC] some help requested for constructing an appropriate design matrix in LIMMA   Belinda Phipson
• [BioC] [Limma] Calculate the relation between mRNA and miRNA   Yao Chen
• [BioC] readGapppedAlignmentpairs questions   Martin Morgan
• [BioC] readGapppedAlignmentpairs questions   Martin Morgan
• [BioC] readGapppedAlignmentpairs questions   Wei Shi
• [BioC] Calculate the relation between mRNA and miRNA   Gordon K Smyth
• [BioC] design matrix edge R pairwise comparison at different time points after infection with replicates   Gordon K Smyth
• [BioC] Getting different results with 2 models for factorial designs with LIMMA   Garcia Orellana,Miriam
• [BioC] Getting different results with 2 models for factorial designs with LIMMA   Garcia Orellana,Miriam
• [BioC] Loading ArrayVision microarray data into Limma   Maite Iriondo
• [BioC] design matrix edge R pairwise comparison at different time points after infection with replicates   Kaat De Cremer
• [BioC] beadarray package: get error message when using summarize function   bzguan at ucdavis.edu
• [BioC] help with multiple testing   efthimiosm
• [BioC] help with multiple testing   Yao Chen
• [BioC] CQN Package   Xin Davis
• [BioC] CQN Package   Kasper Daniel Hansen
• [BioC] DEXSeq: problem with dexseq_prepare_annotation.py   Bulak Arpat
• [BioC] 2012 Systems Bioinformatics Workshop   Christopher Bare
• [BioC] A question with DEXSeq package: inconsistency between normalized counts vs. fitted expression, fitted splicing or fold changes   Yao,Hui
• [BioC] help with multiple testing   Wolfgang Huber
• [BioC] nearest() for GRanges   Valerie Obenchain
• [BioC] interactions between variables in DEXSeq   Elena Sorokin
• [BioC] Bioc2012 : July 24-25   Valerie Obenchain
• [BioC] Extracting a .CEL file from an AffyBatch Object   Fong Chun Chan
• [BioC] design matrix edge R pairwise comparison at different time points after infection with replicates   Kaat De Cremer
• [BioC] Extracting a .CEL file from an AffyBatch Object   James W. MacDonald
• [BioC] nearest() for GRanges   Cook, Malcolm
• [BioC] 2 different factorial analysis codes in LIMMA give different logFC but same values for other components of TOPTABLE   Garcia Orellana,Miriam
• [BioC] Using limma for quantitative proteomics data   Yong Li
• [BioC] Using limma for quantitative proteomics data   Yong Li
• [BioC] nearest() for GRanges   Dan Tenenbaum
• [BioC] Quality Diagnostics of Affy Arrays using PLM   Grant Izmirlian [guest]
• [BioC] Quality Diagnostics of Affy Arrays using PLM   Grant Izmirlian
• [BioC] 2 different factorial analysis codes in LIMMA give different logFC but same values for other components of TOPTABLE   Gordon K Smyth
• [BioC] Extracting a .CEL file from an AffyBatch Object   Fong Chun Chan
• [BioC] Loading ArrayVision microarray data into Limma   Gordon K Smyth
• [BioC] DEXSeq question   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] Compressed boxplots after 'normexp+offset' background correction of Agilent one color microarrays in LIMMA   Mitchell, Sara N
• [BioC] design matrix edge R pairwise comparison at different time points after infection with replicates   Gordon K Smyth
• [BioC] matrix like object with Rle columns   Kasper Daniel Hansen
• [BioC] matrix like object with Rle columns   Michael Lawrence
• [BioC] matrix like object with Rle columns   Kasper Daniel Hansen
• [BioC] matrix like object with Rle columns   Kasper Daniel Hansen
• [BioC] Quality Diagnostics of Affy Arrays using PLM   Benjamin Bolstad
• [BioC] Kaplan Meier curve   wenhuo hu
• [BioC] Using limma for quantitative proteomics data   axel.klenk at actelion.com
• [BioC] Kaplan Meier curve   Heidi Dvinge
• [BioC] other questions for HTqPCR   Heidi Dvinge
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] A question with DEXSeq package: inconsistency between normalized counts vs. fitted expression, fitted splicing or fold changes   Alejandro Reyes
• [BioC] matrix like object with Rle columns   Michael Lawrence
• [BioC] How do you find your orthologues?   Karl Brand
• [BioC] Using limma for quantitative proteomics data   Yong Li
• [BioC] DEXSeq question   Alejandro Reyes
• [BioC] interactions between variables in DEXSeq   Alejandro Reyes
• [BioC] How do you find your orthologues?   Hans-Rudolf Hotz
• [BioC] How do you find your orthologues?   alessandro brozzi
• [BioC] pvalue and padj in DESeq   narges [guest]
• [BioC] HTqPCR - limmaCtData using samples with different number of replicates?   Fletez-Brant, Christopher (NIH/VRC) [C]
• [BioC] A question with DEXSeq package: inconsistency between normalized counts vs. fitted expression, fitted splicing or fold changes   Yao,Hui
• [BioC] mzR error   Gavin Blackburn [guest]
• [BioC] HTqPCR - limmaCtData using samples with different number of replicates?   Heidi Dvinge
• [BioC] DESeq analysis   narges [guest]
• [BioC] mzR error   Laurent Gatto
• [BioC] How do you find your orthologues?   Karl Brand
• [BioC] Compressed boxplots after 'normexp+offset' background correction of Agilent one color microarrays in LIMMA   Heidi Dvinge
• [BioC] A question with DEXSeq package: inconsistency between normalized counts vs. fitted expression, fitted splicing or fold changes   Alejandro Reyes
• [BioC] mzR error   Laurent Gatto
• [BioC] How do you find your orthologues?   James W. MacDonald
• [BioC] A question with DEXSeq package: inconsistency between normalized counts vs. fitted expression, fitted splicing or fold changes   Yao,Hui
• [BioC] HTqPCR - limmaCtData using samples with different number of replicates?   Fletez-Brant, Christopher (NIH/VRC) [C]
• [BioC] nearest() for GRanges   Cook, Malcolm
• [BioC] Unable to open database file, cummeRbund error.   Hardcastle, Justin
• [BioC] HTqPCR problems   Simon Melov
• [BioC] HTqPCR problems   Heidi Dvinge
• [BioC] Kaplan Meier curve   wenhuo hu
• [BioC] Overlapping ROC plots   Yadav Sapkota
• [BioC] edge R design matrix pairwise comparison at different time points after infection with replicates   Gordon K Smyth
• [BioC] HTqPCR problems   Simon Melov
• [BioC] glmFit options in edgeR not passed to mglmLS?   Gordon K Smyth
• [BioC] Printing arrayQualityMetrics report   David Westergaard
• [BioC] HTqPCR problems   Simon Melov
• [BioC] Finding TSS locations   Bartlett, Thomas
• [BioC] Finding TSS locations   Moiz Bootwalla
• [BioC] GEOquery, GSEMatrix parameter and lifecycle of GEO series data   Gustavo Fernández Bayón
• [BioC] mzR error   Gavin Blackburn
• [BioC] mzR error   Laurent Gatto
• [BioC] How to create a phenodata   Thileepan [guest]
• [BioC] Finding differential expressed genes for GSE   Thileepan [guest]
• [BioC] Finding differential expressed genes for GSE   Sean Davis
• [BioC] Finding differential expressed genes for GSE   Sean Davis
• [BioC] gene2pathway retrain() error: species \'hsa\' unknown   Carl Hinrichs [guest]
• [BioC] Gviz: Error plotting C.elegans ideogram   Michael Dondrup
• [BioC] Finding TSS locations   Bartlett, Thomas
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   James Perkins
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Andreas Heider
• [BioC] Finding TSS locations   Moiz Bootwalla
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   James Perkins
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Andreas Heider
• [BioC] Unable to open database file, cummeRbund error.   Loyal Goff
• [BioC] BiomaRt Details   Ovokeraye Achinike-Oduaran
• [BioC] How to create a phenodata   Vincent Carey
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   James Perkins
• [BioC] matrix like object with Rle columns   Kasper Daniel Hansen
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Andreas Heider
• [BioC] matrix like object with Rle columns   Michael Lawrence
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Benilton Carvalho
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Andreas Heider
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   James Perkins
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   James Perkins
• [BioC] GEOquery, GSEMatrix parameter and lifecycle of GEO series data   Gustavo Fernández Bayón
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Andreas Heider
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   Benilton Carvalho
• [BioC] Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays   James Perkins
• [BioC] GEOquery, GSEMatrix parameter and lifecycle of GEO series data   Sean Davis
• [BioC] BiomaRt Details   Steffen Durinck
• [BioC] GEOquery, GSEMatrix parameter and lifecycle of GEO series data   James F. Reid
• [BioC] Cleaning up after getSeq(BSgenome, GRanges)   Steve Lianoglou
• [BioC] Illumine bead array PROBE_TYPE values   heyi xiao
• [BioC] DESeq analysis   Wolfgang Huber
• [BioC] matrix like object with Rle columns   Jeff Leek
• [BioC] Operations on GenomicRanges metadata information   Aleš Maver
• [BioC] matrix like object with Rle columns   Hervé Pagès
• [BioC] matrix like object with Rle columns   Kasper Daniel Hansen
• [BioC] matrix like object with Rle columns   Michael Lawrence
• [BioC] matrix like object with Rle columns   Hervé Pagès
• [BioC] Operations on GenomicRanges metadata information   Michael Lawrence
• [BioC] matrix like object with Rle columns   Michael Lawrence
• [BioC] oligo: ordering of \"backgroundCorrect\" and \"normalize\" output values   Cindy [guest]
• [BioC] oligo: ordering of \"backgroundCorrect\" and \"normalize\" output values   Benilton Carvalho
• [BioC] HTqPCR problems   Heidi Dvinge
• [BioC] plotCtArray example request   Heidi Dvinge
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] HTqPCR problems   Simon Melov
• [BioC] HTqPCR problems   Heidi Dvinge
• [BioC] pvalue and padj in DESeq   Simon Anders
• [BioC] BiomaRt Details   Ovokeraye Achinike-Oduaran
• [BioC] XCMS / mzR / Rcpp dependency issue   Uwe Schmitt
• [BioC] XCMS / mzR / Rcpp dependency issue   Laurent Gatto
• [BioC] XCMS / mzR / Rcpp dependency issue   Uwe Schmitt
• [BioC] Illumine bead array PROBE_TYPE values   Mike Smith
• [BioC] GEOquery, GSEMatrix parameter and lifecycle of GEO series data   Gustavo Fernández Bayón
• [BioC] GEOquery, GSEMatrix parameter and lifecycle of GEO series data   Sean Davis
• [BioC] Merging two tilingfeaturesets into one set.   Yoo, Seungyeul
• [BioC] DEseq and FDR correction   Oren Schaedel
• [BioC] matrix like object with Rle columns   Hervé Pagès
• [BioC] Operations on GenomicRanges metadata information   Aleš Maver
• [BioC] Unable to open database file, cummeRbund error.   Hardcastle, Justin
• [BioC] Contrast Problem   Aditi Rambani
• [BioC] HTqPCR problems   Simon Melov
• [BioC] R 2.15.1 ReadAffy error   DaveW [guest]
• [BioC] Differential gene expression: EdgeR / DESeq and identifying noise/outliers   Michael Salbaum
• [BioC] Differential gene expression: EdgeR / DESeq and identifying noise/outliers   Gordon K Smyth
• [BioC] Contrast Problem   Gordon K Smyth
• [BioC] FW: DESeq analysis   Fatemehsadat Seyednasrollah
• [BioC] GappedAlignmentPairs requests   Michael Lawrence
• [BioC] Unable to open database file, cummeRbund error.   Kasper Daniel Hansen
• [BioC] Affymetrix GeneChip Human Promoter 1.0R Array   Alla Bulashevska
• [BioC] HTqPCR problems   Simon Melov
• [BioC] XCMS / mzR / Rcpp dependency issue   Dan Tenenbaum
• [BioC] mzR error   Laurent Gatto
• [BioC] mzR error   Laurent Gatto
• [BioC] Exonmap & xmapcore covdesc variable problem   Prime, John
• [BioC] GenomicFeatures installation error -- object ‘readDNAStringSet’ is not exported by 'namespace:Biostrings'   Tim Triche, Jr.
• [BioC] question regarding using cummeRbund package   Jack Luo
• [BioC] GenomicFeatures installation error -- object ‘readDNAStringSet’ is not exported by 'namespace:Biostrings'   Dan Tenenbaum
• [BioC] GenomicFeatures installation error -- object ‘readDNAStringSet’ is not exported by 'namespace:Biostrings'   Tim Triche, Jr.
• [BioC] GenomicFeatures installation error -- object ‘readDNAStringSet’ is not exported by 'namespace:Biostrings'   Tim Triche, Jr.
• [BioC] question regarding using cummeRbund package   Dan Tenenbaum
• [BioC] Contrast Problem   Aditi Rambani
• [BioC] Contrast Problem   Gordon K Smyth
• [BioC] Cleaning up after getSeq(BSgenome, GRanges)   Hervé Pagès
• [BioC] Cleaning up after getSeq(BSgenome, GRanges)   Steve Lianoglou

Last message date: Sat Jun 30 20:35:26 CEST 2012
Archived on: Sat Jun 30 20:35:34 CEST 2012

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