[BioC] processed gene expression datasets

[Sean Davis]

On Tue, Jun 12, 2012 at 5:46 AM, Alyaa Mahmoud <alyamahmoud at gmail.com> wrote:
> Hi All
>
> I would highly appreciate if you anyone would direct me to some resource
> for already analysed gene expression data for different human conditions,
> e.g. cancer, diseases ..etc. i just need to collect expression status of as
> many genes as possible in different conditions.
>
> I know of GEO ofcourse but its mostly .CEL files and I need ready-processed
> and analysed data.

Actually, the RAW data in GEO can include .CEL files, but the data in
GEO (available via the website or via the GEOquery package) are
processed but do not include analysis in terms of groups.

You may want to look at the gene expression atlas:

http://www.ebi.ac.uk/gxa/