[BioC] How to print out normalized Cy5 and Cy3 signals

Belinda Phipson phipson at wehi.EDU.AU
Mon Jun 18 02:54:01 CEST 2012


Hi Mei

Check the names of your data object:
> names(data)
to figure out where the normalized data is and then use the 
> write.csv(data$...,file="norm.csv") 
which can write matrices or data frames to a file which can be opened in
excel.

Cheers,
Belinda

-----Original Message-----
From: bioconductor-bounces at r-project.org
[mailto:bioconductor-bounces at r-project.org] On Behalf Of JiangMei
Sent: Saturday, 16 June 2012 5:05 AM
To: bioconductor at r-project.org
Subject: [BioC] How to print out normalized Cy5 and Cy3 signals


Hi All. Sorry to bother you.

I used limma package to normalize my two-color microarray data. I want to
export the normalized Cy5 and Cy3 signals. Does anyone know how to do that?
Thanks very much in advance.


Best, Mei


 		 	   		  
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