[BioC] Printing arrayQualityMetrics report

[David Westergaard]

Hi,

I actually managed to produce a sufficient pdf to include just by
upgrading my browser and fixing minor issues in inkscape.

Thanks for the help,
David

2012/6/22 Wolfgang Huber <whuber at embl.de>:
> Dear James
>
> that is one way to go about it. A more direct way for getting at this table
> is to keep the return value of the call to the function arrayQualityMetrics:
>
>  myReport = arrayQualityMetrics( eset, ...)
>
> and access the table via
>
>  myReport$arrayTable
>
> Please use arrayQualityMetrics >= 3.13.5 for this (unfortunately in previous
> versions due to an oversight of mine this object was not propagated all the
> way to the return value of arrayQualityMetrics).
>
> Version 3.13.5 is in svn and should also soon be on the website / in the
> package repository. It also fixes the 'intgroup' issue reported by Sonal and
> Tim.
>
>        Best wishes
>        Wolfgang
>
>
>
>
>
> James F. Reid scripsit 06/22/2012 10:11 AM:
>
> ...[snip]
>
>
>> you could extract the table contents using the readHTMLTable function
>> from the 'XML' package and for the figures just include the pdfs as
>> figures and add a caption to them.
>>
>> HTH,
>> J.
>
>
> Best wishes
>        Wolfgang
>
> Wolfgang Huber
> EMBL
> http://www.embl.de/research/units/genome_biology/huber
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor