February 2010 Archives by thread

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Starting: Mon Feb 1 19:12:57 CET 2010
Ending: Sun Feb 28 20:54:20 CET 2010
Messages: 123

• [Bioc-sig-seq] countOverlaps Help   Vincent Carey
• [Bioc-sig-seq] countOverlaps Help   Michael Lawrence
• [Bioc-sig-seq] Trimming Solexa/Illumina primers/adaptors; ShortRead   Johannes Rainer
  • [Bioc-sig-seq] Trimming Solexa/Illumina primers/adaptors; ShortRead   Martin Morgan
    • [Bioc-sig-seq] Trimming Solexa/Illumina primers/adaptors; ShortRead   Johannes Rainer
• [Bioc-sig-seq] mixing 2 fastQ files   Ramzi TEMANNI
  • [Bioc-sig-seq] mixing 2 fastQ files   Ramzi TEMANNI
    • [Bioc-sig-seq] mixing 2 fastQ files   Martin Morgan
• [Bioc-sig-seq] read sequences from the web   Hervé Pagès
  • [Bioc-sig-seq] read sequences from the web   Thomas Girke
    • [Bioc-sig-seq] read sequences from the web   Hervé Pagès
      • [Bioc-sig-seq] read sequences from the web   Thomas Girke
  • [Bioc-sig-seq] read sequences from the web   Laurent Gautier
    • [Bioc-sig-seq] read sequences from the web   Michael Lawrence
      • [Bioc-sig-seq] read sequences from the web   Seth Falcon
• [Bioc-sig-seq] uniqueFilter in the ShortRead package   Jason Lu
  • [Bioc-sig-seq] uniqueFilter in the ShortRead package   Martin Morgan
• [Bioc-sig-seq] strandedness bug in Rsamtools?   Steve Lianoglou
  • [Bioc-sig-seq] strandedness bug in Rsamtools?   Steve Lianoglou
    • [Bioc-sig-seq] strandedness bug in Rsamtools?   Martin Morgan
    • [Bioc-sig-seq] strandedness bug in Rsamtools?   Martin Morgan
      • [Bioc-sig-seq] strandedness bug in Rsamtools?   Vincent Carey
      • [Bioc-sig-seq] strandedness bug in Rsamtools?   Martin Morgan
      • [Bioc-sig-seq] strandedness bug in Rsamtools?   Martin Morgan
      • [Bioc-sig-seq] strandedness bug in Rsamtools?   Vincent Carey
• [Bioc-sig-seq] strandedness bug in Rsamtools?   Steve Lianoglou
  • [Bioc-sig-seq] strandedness bug in Rsamtools?   Steve Lianoglou
    • [Bioc-sig-seq] strandedness bug in Rsamtools?   Martin Morgan
      • [Bioc-sig-seq] strandedness bug in Rsamtools?   Steve Lianoglou
• [Bioc-sig-seq] Rsamtools   Martin Morgan
• [Bioc-sig-seq] uniqueFilter in the ShortRead package - Integer overflow - bug fix   Nora Rieber
  • [Bioc-sig-seq] uniqueFilter in the ShortRead package - Integer overflow - bug fix   Martin Morgan
• [Bioc-sig-seq] Annotation of ChIP-Seq peaks   pterry at huskers.unl.edu
  • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Michael Lawrence
  • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Julie Zhu
    • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Michael Lawrence
      • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Julie Zhu
      • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Michael Lawrence
      • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Julie Zhu
      • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Seth Falcon
      • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Julie Zhu
      • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Seth Falcon
      • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Julie Zhu
  • [Bioc-sig-seq] Annotation of ChIP-Seq peaks   Muino, Jose
• [Bioc-sig-seq] ChIPpeakAnno fails to interpret standard chromosome name and strandedness   Ivan Gregoretti
• [Bioc-sig-seq] identifying a common motif in a set of sequences   Johannes Rainer
  • [Bioc-sig-seq] identifying a common motif in a set of sequences   Muino, Jose
  • [Bioc-sig-seq] identifying a common motif in a set of sequences   Michael Lawrence
• [Bioc-sig-seq] identifying a common motif in a set of sequences   Johannes Rainer
• [Bioc-sig-seq] ChIPpeakAnno fails to interpret standard chromosome name and strandedness   Julie Zhu
• [Bioc-sig-seq] skip the comment lines with read.BStringSet   burak kutlu
  • [Bioc-sig-seq] skip the comment lines with read.BStringSet   Hervé Pagès
• [Bioc-sig-seq] srFilter function in ShortRead   joseph
  • [Bioc-sig-seq] srFilter function in ShortRead   Vincent Carey
    • [Bioc-sig-seq] srFilter function in ShortRead   Marcus Davy
• [Bioc-sig-seq] Sorting RangedData   Ivan Gregoretti
  • [Bioc-sig-seq] Sorting RangedData   Michael Lawrence
    • [Bioc-sig-seq] Sorting RangedData   Ivan Gregoretti
• [Bioc-sig-seq] extendReads in package chipseq - reads are extended below zero   Nora Rieber
  • [Bioc-sig-seq] extendReads in package chipseq - reads are extended below zero   Michael Lawrence
• [Bioc-sig-seq] ShortRead sequences   Droit Arnaud
  • [Bioc-sig-seq] ShortRead sequences   Wolfgang Huber
  • [Bioc-sig-seq] ShortRead sequences   Martin Morgan
    • [Bioc-sig-seq] ShortRead sequences   Muino, Jose
• [Bioc-sig-seq] locally aligned reads   Hans-Ulrich Klein
  • [Bioc-sig-seq] locally aligned reads   Patrick Aboyoun
    • [Bioc-sig-seq] locally aligned reads   Martin Morgan
• [Bioc-sig-seq] RangedData objects. Redefining widths with conditions.   Ivan Gregoretti
  • [Bioc-sig-seq] RangedData objects. Redefining widths with conditions.   Michael Lawrence
    • [Bioc-sig-seq] RangedData objects. Redefining widths with conditions.   Ivan Gregoretti
      • [Bioc-sig-seq] RangedData objects. Redefining widths with conditions.   Ivan Gregoretti
• [Bioc-sig-seq] Using SVN for a "data package" with HTS data -- howto???   Leonardo Collado Torres
  • [Bioc-sig-seq] Using SVN for a "data package" with HTS data -- howto???   Sean Davis
• [Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch   Simon Anders
• [Bioc-sig-seq] Rsamtools problem   Droit Arnaud
  • [Bioc-sig-seq] Rsamtools problem   Patrick Aboyoun
    • [Bioc-sig-seq] Rsamtools problem   Droit Arnaud
      • [Bioc-sig-seq] Rsamtools problem   Steve Lianoglou
      • [Bioc-sig-seq] Rsamtools problem   Kasper Daniel Hansen
      • [Bioc-sig-seq] Rsamtools problem   Hervé Pagès
• [Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch   Patrick Aboyoun
  • [Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch   Harris A. Jaffee
    • [Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch   Harris A. Jaffee
• [Bioc-sig-seq] ReadFastq error   Ramzi TEMANNI
  • [Bioc-sig-seq] ReadFastq error   Martin Morgan
    • [Bioc-sig-seq] ReadFastq error   Ramzi TEMANNI
      • [Bioc-sig-seq] ReadFastq error   Martin Morgan
      • [Bioc-sig-seq] ReadFastq error   Ramzi TEMANNI
      • [Bioc-sig-seq] ReadFastq error   Seth Falcon
      • [Bioc-sig-seq] ReadFastq error   Ramzi TEMANNI
  • [Bioc-sig-seq] ReadFastq error   Hervé Pagès
    • [Bioc-sig-seq] ReadFastq error   Hervé Pagès
• [Bioc-sig-seq] BSgenome installation error from SVN   Nicolas Delhomme
  • [Bioc-sig-seq] BSgenome installation error from SVN   Sean Davis
  • [Bioc-sig-seq] BSgenome installation error from SVN   Droit Arnaud
    • [Bioc-sig-seq] BSgenome installation error from SVN   Kasper Daniel Hansen
      • [Bioc-sig-seq] BSgenome installation error from SVN   Nicolas Delhomme
      • [Bioc-sig-seq] BSgenome installation error from SVN   Sean Davis
      • [Bioc-sig-seq] BSgenome installation error from SVN   Kasper Daniel Hansen
      • [Bioc-sig-seq] BSgenome installation error from SVN   Nicolas Delhomme
      • [Bioc-sig-seq] BSgenome installation error from SVN   Wolfgang Huber
• [Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class?   Johannes Rainer
  • [Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class?   Martin Morgan
    • [Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class?   Martin Morgan
• [Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class?   Johannes Rainer
• [Bioc-sig-seq] geneMouse dataset from chipseq   Fuad Gwadry
  • [Bioc-sig-seq] geneMouse dataset from chipseq   Michael Lawrence
• [Bioc-sig-seq] ShortRead support for "id", "paired read number" and "multiplex index" when reading an Illumina export file   Nicolas Delhomme
  • [Bioc-sig-seq] ShortRead support for "id", "paired read number" and "multiplex index" when reading an Illumina export file   Martin Morgan
    • [Bioc-sig-seq] ShortRead support for "id", "paired read number" and "multiplex index" when reading an Illumina export file   Martin Morgan
• [Bioc-sig-seq] error with export {rtracklayer}   joseph
  • [Bioc-sig-seq] error with export {rtracklayer}   Patrick Aboyoun
    • [Bioc-sig-seq] error with export {rtracklayer}   Michael Lawrence
• [Bioc-sig-seq] Arabidopsis reference genome   Michael Krogh Jensen
  • [Bioc-sig-seq] Arabidopsis reference genome   Muino, Jose
  • [Bioc-sig-seq] Arabidopsis reference genome   Muino, Jose
• [Bioc-sig-seq] GRanges object from AlignedRead?   joseph
  • [Bioc-sig-seq] GRanges object from AlignedRead?   Patrick Aboyoun
    • [Bioc-sig-seq] GRanges object from AlignedRead?   Martin Morgan
• [Bioc-sig-seq] strand() in ShortRead, Rsamtools   Martin Morgan
  • [Bioc-sig-seq] strand() in ShortRead, Rsamtools   Kasper Daniel Hansen
    • [Bioc-sig-seq] strand() in ShortRead, Rsamtools   Martin Morgan
      • [Bioc-sig-seq] strand() in ShortRead, Rsamtools   Martin Morgan

Last message date: Sun Feb 28 20:54:20 CET 2010
Archived on: Sun Feb 28 20:52:18 CET 2010

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