[Bioc-sig-seq] R package for DGE analysis between multiple RNA-Seq samples

[Gordon K Smyth]

Dear Bruno,

As Davis replied to you on the Bioconductor mailing list, the glm 
functions in edgeR perform differential expression analysis of arbitrarily 
complicated RNA-Seq experiments.  There is a case study in the edgeR 
User's guide.

Best wishes
Gordon

---------------------------------------------
Professor Gordon K Smyth,
Bioinformatics Division,
Walter and Eliza Hall Institute of Medical Research,
1G Royal Parade, Parkville, Vic 3052, Australia.
Tel: (03) 9345 2326, Fax (03) 9347 0852,
smyth at wehi.edu.au
http://www.wehi.edu.au
http://www.statsci.org/smyth


> Date: Mon, 4 Jul 2011 15:48:42 +0200
> From: Bruno Zeitouni <bruno.zeitouni at curie.fr>
> To: <bioc-sig-sequencing at r-project.org>
> Subject: [Bioc-sig-seq] R package for DGE analysis between multiple
> 	RNA-Seq	samples
>
> Dear all,
>
> Have you already known about a RNA-seq R Package for the differential
> expression analysis between multiple samples (ANOVA-like) ?
> Tools such as edgeR or DESeq seems to be limited to the analysis between
> two conditions only.
>
> thanks
>
> Bruno
>
> -- 
>
> Bruno Zeitouni, PhD
> Institut Curie - U900 INSERM - Mines ParisTech
> Equipe Bioinformatique
> B?timent de Biologie du D?veloppement
> 26 rue d'ULM
> 75248 Paris Cedex 05 - FRANCE
>
> T?l  : +33 1 56 24 69 31
> Mail : bruno.zeitouni at curie.fr

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