[Bioc-sig-seq] R package for DGE analysis between multiple RNA-Seq samples

[Krys Kelly]

You could take a look at baySeq.

Krys

***********************
Dr Krystyna A Kelly
Bioinformatics Group Leader
Department of Plant Sciences
University of Cambridge
Downing Street
Cambridge CB2 3EA
Tel: 01223 748969
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-----Original Message-----
From: bioc-sig-sequencing-bounces at r-project.org
[mailto:bioc-sig-sequencing-bounces at r-project.org] On Behalf Of Bruno
Zeitouni
Sent: 04 July 2011 14:49
To: bioc-sig-sequencing at r-project.org
Subject: [Bioc-sig-seq] R package for DGE analysis between multiple RNA-Seq
samples

Dear all,

Have you already known about a RNA-seq R Package for the differential
expression analysis between multiple samples (ANOVA-like) ?
Tools such as edgeR or DESeq seems to be limited to the analysis between
two conditions only.

thanks

Bruno

-- 

Bruno Zeitouni, PhD
Institut Curie - U900 INSERM - Mines ParisTech
Equipe Bioinformatique
Bâtiment de Biologie du Développement
26 rue d'ULM
75248 Paris Cedex 05 - FRANCE

Tél  : +33 1 56 24 69 31
Mail : bruno.zeitouni at curie.fr

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