September 2012 Archives by date

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Starting: Sat Sep 1 00:46:39 CEST 2012
Ending: Sun Sep 30 22:50:19 CEST 2012
Messages: 503

• [BioC] Data set for comparing statistical tests   Jorge Miró
• [BioC] transcriptLocs2refLocs Bug when strand is negative   Cook, Malcolm
• [BioC] Data set for comparing statistical tests   Tim Triche, Jr.
• [BioC] BUG in Genomic(Features|Ranges): names(unlist(transcriptsBy(txdb, 'gene'))) is UNRELIABLE!!!   Cook, Malcolm
• [BioC] Annotation for Agilent Chip G4858A-039494   Constanze Schmitt [guest]
• [BioC] a question about how can i display list of differentially expressed genes   Islam Amin
• [BioC] BUG in Genomic(Features|Ranges): names(unlist(transcriptsBy(txdb, 'gene'))) is UNRELIABLE!!!   Martin Morgan
• [BioC] transcriptLocs2refLocs Bug when strand is negative   Martin Morgan
• [BioC] pdmClass plot error   Martin Morgan
• [BioC] regarding mapping package   Martin Morgan
• [BioC] a question about how can i display list of differentially expressed genes   Martin Morgan
• [BioC] GeneAnswer package Query   Reema Singh
• [BioC] GeneAnswer package Query   Steve Lianoglou
• [BioC] GeneAnswer package Query   Sean Davis
• [BioC] Annotation for Agilent Chip G4858A-039494   Tim Triche, Jr.
• [BioC] BUG in Genomic(Features|Ranges): names(unlist(transcriptsBy(txdb, 'gene'))) is UNRELIABLE!!!   Tim Triche, Jr.
• [BioC] question about wilcoxon sign rank in multtest package   Islam Amin
• [BioC] BUG in Genomic(Features|Ranges): names(unlist(transcriptsBy(txdb, 'gene'))) is UNRELIABLE!!!   Martin Morgan
• [BioC] goseq/nullp with non-native identifiers   Ravi Karra
• [BioC] GeneAnswer package Query   Gang Feng
• [BioC] GeneAnswer package Query   Reema Singh
• [BioC] GeneAnswer package Query   Gang Feng
• [BioC] arrayQualityMetrics error on windows   Marcus Davy
• [BioC] arrayQualityMetrics error on windows   Marcus Davy
• [BioC] arrayQualityMetrics error on windows   Martin Morgan
• [BioC] arrayQualityMetrics error on windows   Marcus Davy
• [BioC] CAMERA for non-directional gene sets   Simon de Bernard
• [BioC] Beadarray Filtering by Probequality   Mark Dunning
• [BioC] error in DESeq : analysis without replicates   Andreia Fonseca
• [BioC] GeneAnswer package Query   Reema Singh
• [BioC] GeneAnswer package Query   Reema Singh
• [BioC] error in DESeq : analysis without replicates   Wolfgang Huber
• [BioC] error in DESeq : analysis without replicates   Andreia Fonseca
• [BioC] error in DESeq : analysis without replicates   Wolfgang Huber
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Marcus Davy
• [BioC] goseq/nullp with non-native identifiers   Alicia Oshlack
• [BioC] Understand​ing "minfi" package & its errors: for the analysis of 450K Methylation chip   pooja mandaviya
• [BioC] job advertisement University of Oxford   Francesca Buffa
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Gordon K Smyth
• [BioC] edgeR query   Shravanthi P
• [BioC] AnnotationDbi : makeOrgPackageFromNCBI fails for 'Oryctolagus cuniculus' (Rabbit - tax id : 9986)   Osselaer, Steven [JRDBE Extern]
• [BioC] Understand​ing "minfi" package & its errors: for the analysis of 450K Methylation chip   Kasper Daniel Hansen
• [BioC] readQpcrBatch function in qpcrNorm   Mueller, Alan
• [BioC] edgeR query   Alyaa Mahmoud
• [BioC] edgeR query   wenhuo hu
• [BioC] Error in setQCEnvironment(cdfn)   suparna mitra
• [BioC] CAMERA for non-directional gene sets   Wu, Di
• [BioC] Error in setQCEnvironment(cdfn)   James W. MacDonald
• [BioC] BUG in Genomic(Features|Ranges): names(unlist(transcriptsBy(txdb, 'gene'))) is UNRELIABLE!!!   Cook, Malcolm
• [BioC] Error in setQCEnvironment(cdfn)   suparna mitra
• [BioC] CAMERA for non-directional gene sets   Simon de Bernard
• [BioC] transcriptLocs2refLocs Bug when strand is negative   Cook, Malcolm
• [BioC] Error in setQCEnvironment(cdfn)   James W. MacDonald
• [BioC] Error in setQCEnvironment(cdfn)   suparna mitra
• [BioC] Error in setQCEnvironment(cdfn)   James W. MacDonald
• [BioC] Error in setQCEnvironment(cdfn)   suparna mitra
• [BioC] Error in setQCEnvironment(cdfn)   James W. MacDonald
• [BioC] Error in setQCEnvironment(cdfn)   suparna mitra
• [BioC] the set of SNPs difference between Genome build 37.1 and 37.3   shirley zhang
• [BioC] CAMERA for non-directional gene sets   Wu, Di
• [BioC] edgeR query   Steve Lianoglou
• [BioC] Cannot construct AnnotationDb for GOStats   Hollis Wright
• [BioC] Cannot construct AnnotationDb for GOStats   Hollis Wright
• [BioC] Integer overflow when summing an 'integer' Rle   Valerie Obenchain
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Marcus Davy
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Kasper Daniel Hansen
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Gordon K Smyth
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Marcus Davy
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Martin Morgan
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Marcus Davy
• [BioC] Batch effect   Santana Sarma
• [BioC] Advice on experimental setup   David Westergaard
• [BioC] Advice on experimental setup   Sean Davis
• [BioC] Advice on experimental setup   David Westergaard
• [BioC] Advice on experimental setup   Sean Davis
• [BioC] package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel   suparna mitra
• [BioC] Understand​ing "minfi" package & its errors: for the analysis of 450K Methylation chip   pooja mandaviya
• [BioC] package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel   Benilton Carvalho
• [BioC] Advice on experimental setup   Alex Gutteridge
• [BioC] package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel   suparna mitra
• [BioC] Integer overflow when summing an 'integer' Rle   Nicolas Delhomme
• [BioC] package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel   Benilton Carvalho
• [BioC] package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel   suparna mitra
• [BioC] Batch effect   Reema Singh
• [BioC] edgeR query   Shravanthi P
• [BioC] Advice on experimental setup   David Westergaard
• [BioC] Batch effect   James W. MacDonald
• [BioC] undefined columns selected error when using bagging{ipred}   Constanze [guest]
• [BioC] AnnotationDbi : makeOrgPackageFromNCBI fails for 'Oryctolagus cuniculus' (Rabbit - tax id : 9986)   Marc Carlson
• [BioC] edgeR query   James W. MacDonald
• [BioC] Cannot construct AnnotationDb for GOStats   Marc Carlson
• [BioC] ChIPpeakAnno, callEnrichedRegions results have "holes"   Susan Wilson
• [BioC] Batch effect   Wolfgang Huber
• [BioC] Batch effect   Jeff Leek
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Gordon K Smyth
• [BioC] Encrypting IDAT files using IDATreader   Mark Cowley
• [BioC] strange results with edgeR::goodTuring   Gordon K Smyth
• [BioC] problems installing lumi   Hermann Norpois
• [BioC] Advice on experimental setup   Alex Gutteridge
• [BioC] Advice on experimental setup   David Westergaard
• [BioC] Design of experiment....help please   suparna mitra
• [BioC] subdivideGRanges() to a given number of ranges   d r
• [BioC] Design of experiment....help please   suparna mitra
• [BioC] New positions at Novartis   Kauffmann, Audrey
• [BioC] Batch effect   W. Evan Johnson
• [BioC] ChIPpeakAnno - keep fold enrichment information   Zhu, Lihua (Julie)
• [BioC] problems installing lumi   James W. MacDonald
• [BioC] problems installing lumi   Martin Morgan
• [BioC] (no subject)   deepika lakhwani
• [BioC] regarding affylmGUI   deepika lakhwani
• [BioC] subdivideGRanges() to a given number of ranges   Valerie Obenchain
• [BioC] subdivideGRanges() to a given number of ranges   Michael Love
• [BioC] problems installing lumi   Pan Du
• [BioC] problems reading in a flowSet   Gabriel Yvon-Durocher [guest]
• [BioC] regarding affylmGUI   Steve Lianoglou
• [BioC] Batch effect   Tim Triche, Jr.
• [BioC] Batch effect   Steve Piccolo
• [BioC] SNP call estimation from Fluidigm Microarrays   Hans Thompson
• [BioC] A metric to determine best filtration in the limma package   Mark Lawson
• [BioC] A metric to determine best filtration in the limma package   Steve Lianoglou
• [BioC] subdivideGRanges() to a given number of ranges   d r
• [BioC] subdivideGRanges() to a given number of ranges   Mike Love
• [BioC] subdivideGRanges() to a given number of ranges   Martin Morgan
• [BioC] how to build a R package with the inclusion of inst/extdata   Yue Li
• [BioC] how to build a R package with the inclusion of inst/extdata   Steve Lianoglou
• [BioC] how to build a R package with the inclusion of inst/extdata   Yue Li
• [BioC] how to build a R package with the inclusion of inst/extdata   Steve Lianoglou
• [BioC] how to build a R package with the inclusion of inst/extdata   Yue Li
• [BioC] GenomicFeatures Installation Problem   Fong Chun Chan
• [BioC] GenomicFeatures Installation Problem   Martin Morgan
• [BioC] how to build a R package with the inclusion of inst/extdata   Martin Morgan
• [BioC] how to build a R package with the inclusion of inst/extdata   Yue Li
• [BioC] GenomicFeatures Installation Problem   Fong Chun Chan
• [BioC] subdivideGRanges() to a given number of ranges   d r
• [BioC] Gviz: plotTracks with GeneRegionTrack   Hahne, Florian
• [BioC] (no subject)   suparna mitra
• [BioC] Analysis affymetrix of experiment....help please   suparna mitra
• [BioC] Limma normalization error and loess.R segmentation type fault (windows)   Marcus Davy
• [BioC] Design of experiment....help please   Sean Davis
• [BioC] Analysis affymetrix of experiment....help please   Sean Davis
• [BioC] Analysis affymetrix of experiment....help please   suparna mitra
• [BioC] HTqPCR: number of samples, number of features   alessandro brozzi
• [BioC] Analysis affymetrix of experiment....help please   Sean Davis
• [BioC] Analysis affymetrix of experiment....help please   suparna mitra
• [BioC] Analysis affymetrix of experiment....help please   Sean Davis
• [BioC] Analysis affymetrix of experiment....help please   suparna mitra
• [BioC] Analysis affymetrix of experiment....help please   Sean Davis
• [BioC] Analysis affymetrix of experiment....help please   James W. MacDonald
• [BioC] Analysis affymetrix of experiment....help please   suparna mitra
• [BioC] Estimating Size Factors in DESeq Package   Andres Eduardo Rodriguez Cubillos
• [BioC] problems reading in a flowSet   Mike
• [BioC] Advice with RemoveBatchEffect and Rank Product package   Osee Sanogo
• [BioC] Courtesy message for prospective package contributers.   Marc Carlson
• [BioC] Estimating Size Factors in DESeq Package   Simon Anders
• [BioC] Seeking easy way of install all or most of BioConductor   Yannick Pouliot PhD
• [BioC] Seeking easy way of install all or most of BioConductor   James W. MacDonald
• [BioC] Estimating Size Factors in DESeq Package   Tim Triche, Jr.
• [BioC] Estimating Size Factors in DESeq Package   Steve Lianoglou
• [BioC] Estimating Size Factors in DESeq Package   Tim Triche, Jr.
• [BioC] Analysis affymetrix of experiment....help please   suparna mitra
• [BioC] Advice with RemoveBatchEffect and Rank Product package   Sanogo, Yibayiri O
• [BioC] undefined columns selected error when using bagging{ipred}   Valerie Obenchain
• [BioC] HTqPCR: number of samples, number of features   Heidi Dvinge
• [BioC] Advice with RemoveBatchEffect and Rank Product package   Gordon K Smyth
• [BioC] Analysis affymetrix of experiment....help please   suparna mitra
• [BioC] Advice with RemoveBatchEffect and Rank Product package   Gordon K Smyth
• [BioC] Pathway analysis of microarray data using bioconductor   ashwani Kumar
• [BioC] KEGGSOAP: list.pathways(org) or alternative way   Jenny Kartsaki
• [BioC] KEGGSOAP: list.pathways(org) or alternative way   Jenny Kartsaki
• [BioC] Analysis affymetrix of experiment....help please   Sean Davis
• [BioC] Annotate Affy SNP6 probes in bioc   Christian Ruckert
• [BioC] Advice with RemoveBatchEffect and Rank Product package   Osee Sanogo
• [BioC] Analysis affymetrix of experiment....help please   suparna mitra
• [BioC] HTqPCR: number of samples, number of features   alessandro brozzi
• [BioC] Annotate Affy SNP6 probes in bioc   Vincent Carey
• [BioC] A metric to determine best filtration in the limma package   Aaron Mackey
• [BioC] Analysis of Differentially Expressed Genes using Microarray Technology   Eleonora Lusito
• [BioC] Analysis of Differentially Expressed Genes using Microarray Technology   Richard Friedman
• [BioC] Analysis of Differentially Expressed Genes using Microarray Technology   James W. MacDonald
• [BioC] Analysis of Differentially Expressed Genes using Microarray Technology   Thomas H. Hampton
• [BioC] Analysis of Differentially Expressed Genes using Microarray Technology   Eleonora Lusito
• [BioC] Analysis of Differentially Expressed Genes using Microarray Technology   Eleonora Lusito
• [BioC] GEOquery-Problem related to importing data set   Roopa Subbaiaih
• [BioC] GEOquery-Problem related to importing data set   James W. MacDonald
• [BioC] getSRAdbFile cannot open URL   Nicholas Stong
• [BioC] lowess regression   Bogdan Tanasa
• [BioC] GEOquery-Problem related to importing data set   Roopa Subbaiaih
• [BioC] How to retrieve exon ID and gene ID from exon coordinates?   ying chen
• [BioC] [R] lowess regression   Bogdan Tanasa
• [BioC] GEOquery-Problem related to importing data set   James W. MacDonald
• [BioC] GEOquery-Problem related to importing data set   Roopa Subbaiaih
• [BioC] How to retrieve exon ID and gene ID from exon coordinates?   James W. MacDonald
• [BioC] GEOquery-Problem related to importing data set   Roopa Subbaiaih
• [BioC] Advice with RemoveBatchEffect and Rank Product package   Gordon K Smyth
• [BioC] A metric to determine best filtration in the limma package   Gordon K Smyth
• [BioC] Annotation for Agilent Chip G4858A-039494   Marc Carlson
• [BioC] (microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file   Zaki Fadlullah
• [BioC] Advice with RemoveBatchEffect and Rank Product package   Sanogo, Yibayiri O
• [BioC] Fwd: Questions about DecideTest and Several groups   Elodie Chapeaublanc
• [BioC] Questions about DecideTest and Several groups   Elodie Chapeaublanc
• [BioC] counting RNA-seq reads in R/BioC   Mark Robinson
• [BioC] [R] lowess regression   S Ellison
• [BioC] edgeR GLM error   Javier Simón-Sánchez
• [BioC] counting RNA-seq reads in R/BioC   Nicolas Delhomme
• [BioC] edgeR GLM error   Javier Simón-Sánchez
• [BioC] (microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file   James W. MacDonald
• [BioC] Questions about DecideTest and Several groups   James W. MacDonald
• [BioC] Advice with RemoveBatchEffect and Rank Product package   Sanogo, Yibayiri O
• [BioC] A metric to determine best filtration in the limma package   Aaron Mackey
• [BioC] A metric to determine best filtration in the limma package   Aaron Mackey
• [BioC] counting RNA-seq reads in R/BioC   Valerie Obenchain
• [BioC] edgeR multifactorial design: confusing BCV plot   Natasha Sahgal
• [BioC] edgeR multifactorial design: confusing BCV plot   Natasha Sahgal
• [BioC] find CNAs using RAE method   adesh ashok
• [BioC] GenomicRanges : How to retrieve exon ID and gene ID from exon coordinates?   ying chen
• [BioC] How to retrieve exon ID and gene ID from exon coordinates?   ying chen
• [BioC] GenomicRanges : How to retrieve exon ID and gene ID from exon coordinates?   James W. MacDonald
• [BioC] GenomicRanges : How to retrieve exon ID and gene ID from exon coordinates?   Tim Triche, Jr.
• [BioC] GenomicRanges : How to retrieve exon ID and gene ID from exon coordinates?   Tim Triche, Jr.
• [BioC] topGO: full-length descriptions in graph output   Frank Schwach
• [BioC] getSRAdbFile cannot open URL   Martin Morgan
• [BioC] limma separate channel analysis of your data   Gordon K Smyth
• [BioC] A metric to determine best filtration in the limma package   Gordon K Smyth
• [BioC] A metric to determine best filtration in the limma package   Gordon K Smyth
• [BioC] limma separate channel analysis of your data   Sanogo, Yibayiri O
• [BioC] edgeR: confusing BCV plot   Natasha Sahgal
• [BioC] mzR version mismatch   Uwe Schmitt
• [BioC] edgeR: confusing BCV plot   James W. MacDonald
• [BioC] edgeR: confusing BCV plot   Natasha Sahgal
• [BioC] edgeR: confusing BCV plot   wenhuo hu
• [BioC] GWASTools mendelList Constructor   Samuel Younkin
• [BioC] GWASTools mendelList Constructor   Stephanie M. Gogarten
• [BioC] Course Announcement: Advanced R / Bioconductor Programming, Oct. 15-16, Seattle, WA   Martin Morgan
• [BioC] an error to load edgeR   wang peter
• [BioC] what difference to use edgeR in two different mode?   wang peter
• [BioC] question regarding ChIPPeakAnno use   Zhu, Lihua (Julie)
• [BioC] p value   preet [guest]
• [BioC] what difference to use edgeR in two different mode?   Dario Strbenac
• [BioC] edgeR GLM error   Gordon K Smyth
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] [Fwd: Re: HTqPCR error]   Heidi Dvinge
• [BioC] HTqPCR Release 2.10   Heidi Dvinge
• [BioC] what difference to use edgeR in two different mode?   wang peter
• [BioC] mzR version mismatch   Dan Tenenbaum
• [BioC] DESeq - working with more than 2 conditions   Vincenzo Capece
• [BioC] CDF file for Mouse Gene 1.1 ST Array   chenjunhui
• [BioC] topGO: full-length descriptions in graph output   Frank Schwach [guest]
• [BioC] finding end of file in FASTA file   Jack [guest]
• [BioC] DESeq - working with more than 2 conditions   Natasha Sahgal
• [BioC] edgeR GLM error   Javier Simón-Sánchez
• [BioC] DESeq - working with more than 2 conditions   Simon Anders
• [BioC] DESeq - working with more than 2 conditions   Wolfgang Huber
• [BioC] limma separate channel analysis of your data   Sanogo, Yibayiri O
• [BioC] finding end of file in FASTA file   Martin Morgan
• [BioC] Set plot title in makeVennDiagram (ChIPpeakAnno)   António Miguel de Jesus Domingues
• [BioC] Set plot title in makeVennDiagram (ChIPpeakAnno)   Zhu, Lihua (Julie)
• [BioC] Set plot title in makeVennDiagram (ChIPpeakAnno)   António Miguel de Jesus Domingues
• [BioC] Set plot title in makeVennDiagram (ChIPpeakAnno)   Zhu, Lihua (Julie)
• [BioC] creating GSEA files using biomart   Juliet Hannah
• [BioC] creating GSEA files using biomart   Steffen Durinck
• [BioC] GWASTools mendelList Constructor   Samuel Younkin
• [BioC] DiffBind - sample sheet for multiple replicates and peak callers   António Miguel de Jesus Domingues
• [BioC] creating GSEA files using biomart   Juliet Hannah
• [BioC] topGO: full-length descriptions in graph output   James W. MacDonald
• [BioC] How to design matrix that account to effect of transgenic event in edgeR ?   Sermsawat Tunlaya-Anukit
• [BioC] limma separate channel analysis of your data   Gordon K Smyth
• [BioC] edgeR: confusing BCV plot   Gordon K Smyth
• [BioC] Install devel version of edgeR   Gordon K Smyth
• [BioC] HTqPCR error   Heidi Dvinge
• [BioC] Install devel version of edgeR   Gordon K Smyth
• [BioC] DiffBind - overlap between different peak callers   Paolo Kunderfranco
• [BioC] DiffBind - sample sheet for multiple replicates and peak   Paolo Kunderfranco
• [BioC] DiffBind - error in dba.count   António Miguel de Jesus Domingues
• [BioC] Install devel version of edgeR   Javier Simón-Sánchez
• [BioC] DiffBind - error in dba.count   Gordon Brown
• [BioC] DiffBind - error in dba.count   António Miguel de Jesus Domingues
• [BioC] DiffBind - sample sheet for multiple replicates and peak   Rory Stark
• [BioC] DiffBind - sample sheet for multiple replicates and peak   Rory Stark
• [BioC] DiffBind - error in dba.count   Gordon Brown
• [BioC] limma separate channel analysis of your data   Sanogo, Yibayiri O
• [BioC] DiffBind - overlap between different peak callers   Rory Stark
• [BioC] read sequences from fasta file starting with > sign and untill next > sign   Jack [guest]
• [BioC] read sequences from fasta file starting with > sign and untill next > sign   Martin Morgan
• [BioC] submission of new package   Yue Li
• [BioC] submission of new package   Yue Li
• [BioC] DESeq error   Philipp Brand
• [BioC] submission of new package   Marc Carlson
• [BioC] DESeq error   Simon Anders
• [BioC] DESeq error   Wolfgang Huber
• [BioC] DESeq error   Philipp Brand
• [BioC] an error when i installed the DESeq   wang peter
• [BioC] an error when i installed the DESeq   Steve Lianoglou
• [BioC] chip-seq data   John linux-user
• [BioC] Set plot title and background in makeVennDiagram (ChIPpeakAnno)   Zhu, Lihua (Julie)
• [BioC] DESeq - Estimating Dispersion with Technical Replicates   Andres Eduardo Rodriguez Cubillos
• [BioC] DESeq - Estimating Dispersion with Technical Replicates   Steve Lianoglou
• [BioC] DESeq - Estimating Dispersion with Technical Replicates   Wolfgang Huber
• [BioC] easyRNASeq package: error when summarizing per gene   Johanna Schott [guest]
• [BioC] CDF file for Mouse Gene 1.1 ST Array   Benilton Carvalho
• [BioC] topGO: full-length descriptions in graph output   Frank Schwach
• [BioC] CDF file for Mouse Gene 1.1 ST Array   Groot, Philip de
• [BioC] GOSemSim mgeneSim GO.BP calculation time   Guangchuang Yu
• [BioC] easyRNASeq package: error when summarizing per gene   Nicolas Delhomme
• [BioC] ChiPseq input files?   John linux-user
• [BioC] ChiPseq input files?   Jonathan Cairns
• [BioC] ChiPseq input files?   John linux-user
• [BioC] a problem with DESeq   wang peter
• [BioC] How to filter a list of genes by their ontology   Laurent Pays [guest]
• [BioC] ChiPseq input files?   Jonathan Cairns
• [BioC] How to filter a list of genes by their ontology   John linux-user
• [BioC] ChiPseq input files?   John linux-user
• [BioC] ChiPseq input files?   Jonathan Cairns
• [BioC] ChiPseq input files?   John linux-user
• [BioC] ChiPseq input files?   Jonathan Cairns
• [BioC] How to filter a list of genes by their ontology   James W. MacDonald
• [BioC] How to filter a list of genes by their ontology   Martin Morgan
• [BioC] How to filter a list of genes by their ontology   James W. MacDonald
• [BioC] How to filter a list of genes by their ontology   Vincent Carey
• [BioC] limma: is it best to always include paired structure (sibship) in design?   Hooiveld, Guido
• [BioC] Set plot title and background in makeVennDiagram (ChIPpeakAnno)   António Miguel de Jesus Domingues
• [BioC] easyRNASeq package: error when summarizing per gene   Schott, Johanna
• [BioC] PostDoctoral position - Deadline is approaching   RNDr. Martin Pospíšek, Ph.D.
• [BioC] Set plot title and background in makeVennDiagram (ChIPpeakAnno)   Zhu, Lihua (Julie)
• [BioC] Set plot title and background in makeVennDiagram (ChIPpeakAnno)   James W. MacDonald
• [BioC] exomeCopy - memory error   Lescai, Francesco
• [BioC] findOverlappingPeaks in ChipPeakAnno   Zhu, Lihua (Julie)
• [BioC] GenomicRanges : How to retrieve exon ID and gene ID from exon coordinates?   ying chen
• [BioC] exomeCopy - memory error   love
• [BioC] Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer   Bargsten, Joachim
• [BioC] limma: is it best to always include paired structure (sibship) in design?   James W. MacDonald
• [BioC] Fetch scaffold sequences from BSgenome package   Zhu, Lihua (Julie)
• [BioC] heatmap.2   Paolo Kunderfranco
• [BioC] Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer   Marc Carlson
• [BioC] exomeCopy - memory error   Martin Morgan
• [BioC] Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer   Bargsten, Joachim
• [BioC] Fetch scaffold sequences from BSgenome package   Hervé Pagès
• [BioC] Fetch scaffold sequences from BSgenome package   Zhu, Lihua (Julie)
• [BioC] Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer   ying chen
• [BioC] Bioconductor's qvalue package not working on Macs!   Josh B
• [BioC] limma: is it best to always include paired structure (sibship) in design?   Gordon K Smyth
• [BioC] Bioconductor's qvalue package not working on Macs!   Dan Tenenbaum
• [BioC] Bioconductor's qvalue package not working on Macs!   Wolfgang Huber
• [BioC] Building custom genome in MeDIPS   Yan He
• [BioC] beadarray: combining swaths for gene expression   Thomas Kelder
• [BioC] edgeR GLM error   Javier Simón-Sánchez
• [BioC] DESeq cuont table normalization   Fatemehsadat Seyednasrollah
• [BioC] Simple minfi question   Gustavo Fernández Bayón
• [BioC] Bioconductor's qvalue package not working on Macs!   Benilton Carvalho
• [BioC] get gene targets from a specific microRNA   yotsawat pomyen
• [BioC] DEXSeq many exons marked as not testable   Stefan Dentro
• [BioC] Bioconductor's qvalue package not working on Macs!   Josh B
• [BioC] DMET Plus Affymetrix   ramona.schmid at freenet.de
• [BioC] Bioconductor's qvalue package not working on Macs!   Josh B
• [BioC] DESeq cuont table normalization   Wolfgang Huber
• [BioC] exomeCopy - memory error   Lescai, Francesco
• [BioC] rtracklayer, ucscTableQuery -> wgEncodeSydhTfbs, stalling, WHY?   Fenton Christopher Graham
• [BioC] rtracklayer, ucscTableQuery -> wgEncodeSydhTfbs, stalling, WHY?   Chris Fenton [guest]
• [BioC] rtracklayer, ucscTableQuery -> wgEncodeSydhTfbs, stalling, WHY?   Fenton Christopher Graham
• [BioC] Simple minfi question   Kasper Daniel Hansen
• [BioC] Building custom genome in MeDIPS   Steve Lianoglou
• [BioC] DEXSeq many exons marked as not testable   Stefan Dentro
• [BioC] Simple minfi question   Gustavo Fernández Bayón
• [BioC] Building custom genome in MeDIPS   James W. MacDonald
• [BioC] rtracklayer, ucscTableQuery -> wgEncodeSydhTfbs, stalling, WHY?   Vincent Carey
• [BioC] DEXSeq many exons marked as not testable   Alejandro Reyes
• [BioC] multicore and GRangesList [Resurrected]   Cook, Malcolm
• [BioC] rtracklayer, ucscTableQuery -> wgEncodeSydhTfbs, stalling, WHY?   Michael Lawrence
• [BioC] new: Mentored Projects at Bioconductor   Paul Shannon
• [BioC] edgeR GLM error   Gordon K Smyth
• [BioC] how does ShortRead function identify score system   wang peter
• [BioC] how does ShortRead function identify score system   Martin Morgan
• [BioC] DEXSeq many exons marked as not testable   Stefan Dentro
• [BioC] edgeR GLM error   Javier Simón-Sánchez
• [BioC] DEXSeq many exons marked as not testable   Stefan Dentro
• [BioC] DEXSeq many exons marked as not testable   Alejandro Reyes
• [BioC] limma: is it best to always include paired structure (sibship) in design?   Hooiveld, Guido
• [BioC] DEXSeq many exons marked as not testable   Alejandro Reyes
• [BioC] exomeCopy - memory error   love
• [BioC] BioPAX parsing   Frank Kramer
• [BioC] DEXSeq many exons marked as not testable   Stefan Dentro
• [BioC] question on easyRNASeq developer version   Nicolas Delhomme
• [BioC] multicore and GRangesList [Resurrected]   Martin Morgan
• [BioC] A metric to determine best filtration in the limma package   Aaron Mackey
• [BioC] DEXSeq many exons marked as not testable   Steve Lianoglou
• [BioC] DEXSeq many exons marked as not testable   Stefan Dentro
• [BioC] multicore and GRangesList [Resurrected]   Cook, Malcolm
• [BioC] multicore and GRangesList [Resurrected]   Tim Triche, Jr.
• [BioC] import miRNA data   maryam [guest]
• [BioC] multicore and GRangesList [Resurrected]   Cook, Malcolm
• [BioC] edgeR GLM error   Gordon K Smyth
• [BioC] limma: is it best to always include paired structure (sibship) in design?   Gordon K Smyth
• [BioC] Mentored Projects at Bioconductor   Gordon K Smyth
• [BioC] Differential expression analysis of CAGE data   Makis Motakis
• [BioC] Mentored Projects at Bioconductor   Marcus Davy
• [BioC] Differential expression analysis of CAGE data   Steve Lianoglou
• [BioC] Mentored Projects at Bioconductor   Paul Shannon
• [BioC] Error of GTF Annotation in easyRNASeq   Nicolas Delhomme
• [BioC] Error of GTF Annotation in easyRNASeq   Nicolas Delhomme
• [BioC] GO annotation   KJ Lim
• [BioC] Open-rank faculty position, Dept of Biostatistics, Virginia Commonwealth University   Kellie J Archer/FS/VCU
• [BioC] question on easyRNASeq developer version   Yanju Zhang
• [BioC] question on easyRNASeq developer version   Nicolas Delhomme
• [BioC] question on easyRNASeq developer version   Yanju Zhang
• [BioC] Error of GTF Annotation in easyRNASeq   Nicolas Delhomme
• [BioC] Feature request in readVcf   Sean Davis
• [BioC] Feature request in readVcf   Tim Triche, Jr.
• [BioC] Is normalization in edgeR required for small RNA sequencing data?   Daniela Lopes Paim Pinto
• [BioC] GO annotation   Marc Carlson
• [BioC] GO annotation   Srinivasan, Sathish K
• [BioC] NGS public data analysis   Jill Pleasance
• [BioC] GO annotation   KJ Lim
• [BioC] Analysis of public GEO datasets - NGS   Jill [guest]
• [BioC] Is normalization in edgeR required for small RNA sequencing data?   Mark Robinson
• [BioC] Euro Bioc Devel 2012 Zurich CH -- Dec 13-14 2012 -- registration open   Mark Robinson
• [BioC] y解雇辞退及违纪问题员工处理的方法   XzJX8l
• [BioC] Bioconductor Digest, Vol 115, Issue 22   Weng Khong LIM
• [BioC] Feature request in readVcf   Michael Lawrence
• [BioC] attract SynExprs error   Jessica [guest]
• [BioC] which R package can be used to do all the GO analysis   wang peter
• [BioC] IRanges: Error in mk_singleBracketReplacementValue(x, value)   Nicolas Delhomme
• [BioC] Bioconductor Digest, Vol 115, Issue 22   Steve Lianoglou
• [BioC] Feature request in readVcf   Martin Morgan
• [BioC] cosmo for particular sequences   Ana Richardson [guest]
• [BioC] Using \'SSOAP\' to do EMBL-EBI Web Services of emboss needle   LiGang [guest]
• [BioC] shorth function and Affymetrix Hugene   Juan Fernández Tajes
• [BioC] Feature request in readVcf   Michael Lawrence
• [BioC] paCalls oligo package   Juan Fernández Tajes
• [BioC] paCalls oligo package   James W. MacDonald
• [BioC] paCalls oligo package   Juan Fernández Tajes
• [BioC] paCalls oligo package   James W. MacDonald
• [BioC] bioconductor on EMR / mapreduce   seth redmond
• [BioC] bioconductor on EMR / mapreduce   Dan Tenenbaum
• [BioC] how to find DE genes using both of 51bp data and 100bp data   wang peter
• [BioC] GO annotation   Marc Carlson
• [BioC] Citing Bioconductor   Aliaksei Holik
• [BioC] Citing Bioconductor   James W. MacDonald
• [BioC] Citing Bioconductor   Aliaksei Holik
• [BioC] simpleaffy() not recognizing cdf file   SAIC [guest]
• [BioC] simpleaffy() not recognizing cdf file   James W. MacDonald
• [BioC] bioconductor on EMR / mapreduce   seth redmond
• [BioC] (no subject)   Hanyine
• [BioC] Question about gene set enrichment analysis, mistake by taking patients group as control .   Hanyine
• [BioC] Affymetrix data double normalisation   Jun Han [guest]
• [BioC] paCalls oligo package   Juan Fernández Tajes
• [BioC] help with biomaRt bioconductor - Filter upstream_flank NOT FOUND problem   Stefan Kroeger
• [BioC] get gene targets from a specific microRNA   James F.Reid
• [BioC] Vacancies for Bioinformatician/Software Developer   Tanita Casci [guest]
• [BioC] Affymetrix data double normalisation   James W. MacDonald
• [BioC] paCalls oligo package   James W. MacDonald
• [BioC] Affymetrix data double normalisation   shirley zhang
• [BioC] Affymetrix data double normalisation   James W. MacDonald
• [BioC] Affymetrix data double normalisation   shirley zhang
• [BioC] GOSEQ help   Emma Quinn
• [BioC] Problem with SPILL matrix / keyword when using write.FCS and flowCore?   Robert Bruggner
• [BioC] cause 'memory not mapped' when use oligo   Ou, Jianhong
• [BioC] cause 'memory not mapped' when use oligo   Robert Scharpf
• [BioC] cause 'memory not mapped' when use oligo   Benilton Carvalho
• [BioC] bioconductor on EMR / mapreduce   Dan Tenenbaum
• [BioC] bioconductor on EMR / mapreduce   Dan Tenenbaum
• [BioC] rna-seq   saman amini [guest]
• [BioC] bioconductor on EMR / mapreduce   seth redmond
• [BioC] AnnotationDBI   Nick Burgoyne [guest]
• [BioC] VariantAnnotation: readVcf on nonmodel organism   Yannick Wurm
• [BioC] VariantAnnotation: readVcf on nonmodel organism   Valerie Obenchain
• [BioC] VariantAnnotation: readVcf on nonmodel organism   Yannick Wurm
• [BioC] cause 'memory not mapped' when use oligo   Henrik Bengtsson
• [BioC] cause 'memory not mapped' when use oligo   Ou, Jianhong
• [BioC] Problem with SPILL matrix / keyword when using write.FCS and flowCore?   Mike
• [BioC] question on easyRNASeq developer version   RenéBöttcher
• [BioC] differences among pd.mogene.1.0.st.v1, mogene10sttranscriptcluster.db and mogene10stprobeset.db   Javier Pérez Florido
• [BioC] differences among pd.mogene.1.0.st.v1, mogene10sttranscriptcluster.db and mogene10stprobeset.db   Benilton Carvalho
• [BioC] question on easyRNASeq developer version   Nicolas Delhomme
• [BioC] differences among pd.mogene.1.0.st.v1, mogene10sttranscriptcluster.db and mogene10stprobeset.db   James W. MacDonald
• [BioC] AnnotationDBI   James W. MacDonald
• [BioC] Postdoc position available   Ted Morrow [guest]
• [BioC] DEXSeq: Difference in splicing   Dario [guest]
• [BioC] DEXSeq: Difference in splicing   Alejandro Reyes
• [BioC] DEXSeq: Difference in splicing   Dario Beraldi
• [BioC] how to adjust p-value in edgeR   wang peter
• [BioC] how to adjust p-value in edgeR   James W. MacDonald
• [BioC] Converting gene names into Illumina IDs   Aliaksei Holik
• [BioC] Converting gene names into Illumina IDs   Aliaksei Holik
• [BioC] question on easyRNASeq developer version   Nicolas Delhomme
• [BioC] impute package   Farnoosh Haji Sheikhi
• [BioC] impute package   Martin Morgan
• [BioC] GOFunction error   Wang [guest]
• [BioC] Error, while using produceGEOSampleInfoTemplate   Aliaksei Holik
• [BioC] Printing Alt alleles using VariantAnnotation   Mark Dunning
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   Juan Fernández Tajes
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   Benilton Carvalho
• [BioC] Printing Alt alleles using VariantAnnotation   James W. MacDonald
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   James W. MacDonald
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   Juan Fernández Tajes
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   Juan Fernández Tajes
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   James W. MacDonald
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   Steve Lianoglou
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   James W. MacDonald
• [BioC] which R package can be used to do all the GO analysis   Paul Shannon
• [BioC] Analyzing expression Affymetrix Hugene1.0.st array   Juan Fernández Tajes
• [BioC] which R package can be used to do all the GO analysis   Paul Shannon
• [BioC] Printing Alt alleles using VariantAnnotation   Valerie Obenchain
• [BioC] biomaRt for COSMIC: frequency of mutation   Eleonora Lusito
• [BioC] GOFunction error   Jing Wang

Last message date: Sun Sep 30 22:50:19 CEST 2012
Archived on: Mon Oct 1 16:34:19 CEST 2012

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