[BioC] how to adjust p-value in edgeR

[James W. MacDonald]

You don't need topTags() to sort things for you - sorting a matrix or 
data.frame is a straightforward process. See ?order as well as An 
Introduction to R.

Best,

Jim



On 9/27/2012 11:46 AM, wang peter wrote:
> DEAR all:
>            i got the test result by such coding
>
> et<- exactTest(d, pair=c("c0h","t0h"), dispersion="tagwise")
>
> usually should use topTags to adjust the p value, but it canot sort.by
> gene id or names
>
> result<- topTags(et, n=dim(d)[1], adjust.method="BH", sort.by="p.value")
>
> i want to use et$table, but donot know how to adjust its p-value
>
> thank you very much
>

-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099