[BioC] which R package can be used to do all the GO analysis

[Paul Shannon]

Hi Shan,

Here is a good way to get acquainted with Bioconductor's basic GO analysis capabilities:

biocLite(c ('GOstats', 'topGO'))
library(GOstats)
library(topGO)
vignette('GOstatsHyperG')
vignette('topGO')

The two vignettes will be displayed in your default pdf viewer.  They should give you a good start on some of our traditional approaches.  

 - Paul


On Sep 28, 2012, at 12:29 PM, wang peter wrote:

> dear paul:
> thank  u very much for your help
> i have no ideas now
> just do some regular analysis to see what special
> and generate ideas
> 
> first GO term significance test
> then ..
> 
> shan