October 2010 Archives by thread

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Starting: Fri Oct 1 03:48:47 CEST 2010
Ending: Sat Oct 30 14:38:51 CEST 2010
Messages: 68

• [Bioc-sig-seq] GenomicRanges wishlist: IntervalTrees for GRanges   Kasper Daniel Hansen
  • [Bioc-sig-seq] GenomicRanges wishlist: IntervalTrees for GRanges   Michael Lawrence
    • [Bioc-sig-seq] GenomicRanges wishlist: IntervalTrees for GRanges   Ivan Gregoretti
    • [Bioc-sig-seq] GenomicRanges wishlist: IntervalTrees for GRanges   Kasper Daniel Hansen
      • [Bioc-sig-seq] GenomicRanges wishlist: IntervalTrees for GRanges   Michael Lawrence
• [Bioc-sig-seq] Resizing a GRanges object with elements on the "*" strand   Steve Lianoglou
  • [Bioc-sig-seq] Resizing a GRanges object with elements on the "*" strand   Michael Lawrence
    • [Bioc-sig-seq] Resizing a GRanges object with elements on the "*" strand   Steve Lianoglou
    • [Bioc-sig-seq] Resizing a GRanges object with elements on the "*" strand   Martin Morgan
      • [Bioc-sig-seq] Resizing a GRanges object with elements on the "*" strand   Steve Lianoglou
• [Bioc-sig-seq] BioC2010 Simple RNA-seq Use Case lab   pterry at huskers.unl.edu
  • [Bioc-sig-seq] BioC2010 Simple RNA-seq Use Case lab   Steve Lianoglou
  • [Bioc-sig-seq] BioC2010 Simple RNA-seq Use Case lab   Martin Morgan
• [Bioc-sig-seq] drop factor level for seqnames of a GRanges object   Chris Seidel
  • [Bioc-sig-seq] drop factor level for seqnames of a GRanges object   Michael Lawrence
    • [Bioc-sig-seq] drop factor level for seqnames of a GRanges object   Hervé Pagès
    • [Bioc-sig-seq] drop factor level for seqnames of a GRanges object   Kasper Daniel Hansen
      • [Bioc-sig-seq] drop factor level for seqnames of a GRanges object   Michael Lawrence
      • [Bioc-sig-seq] readFastq   Kunbin Qu
      • [Bioc-sig-seq] readFastq   Martin Morgan
• [Bioc-sig-seq] Cached GenomicRanges or RangedData Objects?   Charles C. Berry
  • [Bioc-sig-seq] Cached GenomicRanges or RangedData Objects?   Steve Lianoglou
    • [Bioc-sig-seq] Cached GenomicRanges or RangedData Objects?   Charles C. Berry
      • [Bioc-sig-seq] Cached GenomicRanges or RangedData Objects?   Kasper Daniel Hansen
      • [Bioc-sig-seq] Cached GenomicRanges or RangedData Objects?   Michael Lawrence
      • [Bioc-sig-seq] Cached GenomicRanges or RangedData Objects?   Charles C. Berry
• [Bioc-sig-seq] visualize peaks in genome (overall)   Alper Yilmaz
  • [Bioc-sig-seq] visualize peaks in genome (overall)   Michael Lawrence
• [Bioc-sig-seq] Error in DGEList function in edgeR   Ying Ye
  • [Bioc-sig-seq] Error in DGEList function in edgeR   Heidi Dvinge
• [Bioc-sig-seq] EdgeR questions in analyzing 454 data-about prior.n, TMM, and p_value   Ying Ye
  • [Bioc-sig-seq] EdgeR questions in analyzing 454 data-about prior.n, TMM, and p_value   Mark Robinson
• [Bioc-sig-seq] Bioconductor 2.7 is released   Martin Morgan
• [Bioc-sig-seq] Coercion of GenomeData to RangedData   Dario Strbenac
  • [Bioc-sig-seq] Coercion of GenomeData to RangedData   Vincent Carey
    • [Bioc-sig-seq] Coercion of GenomeData to RangedData   Dario Strbenac
  • [Bioc-sig-seq] Coercion of GenomeData to RangedData   Michael Lawrence
    • [Bioc-sig-seq] Coercion of GenomeData to RangedData   Dario Strbenac
      • [Bioc-sig-seq] Coercion of GenomeData to RangedData   Michael Lawrence
• [Bioc-sig-seq] X11 fatal IO error   Ludo Pagie
• [Bioc-sig-seq] Converting GRanges to data.frame, RangedData, back to GRanges object   pterry at huskers.unl.edu
  • [Bioc-sig-seq] Converting GRanges to data.frame, RangedData, back to GRanges object   Michael Lawrence
• [Bioc-sig-seq] Mac binaries for R 2.12 fixed   Hervé Pagès
• [Bioc-sig-seq] Problem with GenomicRanges: GRanges created prior to R 2.12.0 cannot be loaded with R 2.12.0   Leonardo Collado Torres
  • [Bioc-sig-seq] Problem with GenomicRanges: GRanges created prior to R 2.12.0 cannot be loaded with R 2.12.0   Vincent Carey
    • [Bioc-sig-seq] Problem with GenomicRanges: GRanges created prior to R 2.12.0 cannot be loaded with R 2.12.0   Leonardo Collado Torres
• [Bioc-sig-seq] Unable to read a Bowtie file into ShortRead in a Mac OS X version 10.5.8 with R 2.11.1 and ShortRead 1.6.2   Leonardo Collado Torres
• [Bioc-sig-seq] error with MEDIPS.CpGenrich -> resize + segfault in MEDIPS.plotCalibrationPlot   Nora Rieber
  • [Bioc-sig-seq] error with MEDIPS.CpGenrich -> resize + segfault in MEDIPS.plotCalibrationPlot   Steve Lianoglou
• [Bioc-sig-seq] estimate.mean.fraglen question   pterry at huskers.unl.edu
  • [Bioc-sig-seq] estimate.mean.fraglen question   Michael Lawrence
    • [Bioc-sig-seq] trimLRPatterns related error   Kunbin Qu
      • [Bioc-sig-seq] trimLRPatterns related error   Harris A. Jaffee
• [Bioc-sig-seq] RNA-seq: test for within sample differential counts   Michael Dondrup
  • [Bioc-sig-seq] RNA-seq: test for within sample differential counts   Sean Davis
    • [Bioc-sig-seq] RNA-seq: test for within sample differential counts   Michael Dondrup
  • [Bioc-sig-seq] RNA-seq: test for within sample differential counts   Michal Okoniewski
• [Bioc-sig-seq] error with MEDIPS.CpGenrich -> resize +, segfault in MEDIPS.plotCalibrationPlot   Lukas Chavez Wurm
• [Bioc-sig-seq] Course: Introduction to R / Bioconductor, Seattle Dec 9 / 10   Martin Morgan
• [Bioc-sig-seq] Bioinformatician position opening at the IMPPC Genomics Unit - Badalona - Spain   Lauro Sumoy
• [Bioc-sig-seq] error with MEDIPS.CpGenrich -> resize +, segfault in MEDIPS.plotCalibrationPlot   Nora Rieber
• [Bioc-sig-seq] RangedData versus GenomicRanges/GRanges   Janet Young
  • [Bioc-sig-seq] RangedData versus GenomicRanges/GRanges   Ivan Gregoretti
    • [Bioc-sig-seq] RangedData versus GenomicRanges/GRanges   Michael Lawrence
      • [Bioc-sig-seq] trimLRPatterns question   Kunbin Qu
      • [Bioc-sig-seq] trimLRPatterns question   Harris A. Jaffee
      • [Bioc-sig-seq] trimLRPatterns question   Kunbin Qu
      • [Bioc-sig-seq] trimLRPatterns question   Harris A. Jaffee

Last message date: Sat Oct 30 14:38:51 CEST 2010
Archived on: Sat Oct 30 14:39:04 CEST 2010

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