[Bioc-sig-seq] BioC2010 Simple RNA-seq Use Case lab

[Martin Morgan]

On 10/05/2010 11:30 AM, pterry at huskers.unl.edu wrote:
>  Dear bioc-sig-sequencing,
> 
> I would like to work thru the BioC2010 workshop lab, http://www.bioconductor.org/help/course-materials/2010/BioC2010/Exercises-SimpleRNAseqUseCase.pdf.
> 
> At least three functions and a data set were in a package distributed at the lab in the package HTSandGeneCentricLabs.
> 
> geneBounds
> rpkm
> countExonIdsByTxOverlaps
> multiplex_export.txt.gz
> 
> Might these functions be incorporated into regular bioconductor packages by now?  Or can you recommend how I might work thru this lab now?
> 

Not sure whether you had

  source("http://bioconductor.org/course-packages/install-HTSTrack.R")

as indicated on

  http://www.bioconductor.org/help/course-materials/2010/BioC2010/

and then

  library(HTSandGeneCentricLabs)

? Martin


> Thanks,
> P. Terry
> pterry at huskers.unl.edu
> 
> 	[[alternative HTML version deleted]]
> 
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