[Bioc-sig-seq] call genomic structural variation

[João Fadista]

Yes, but I want to try other callers... 

-----Original Message-----
From: Cei Abreu-Goodger [mailto:cei at ebi.ac.uk] 
Sent: Wednesday, April 29, 2009 4:25 PM
To: João Fadista
Cc: bioc-sig-sequencing at r-project.org
Subject: Re: [Bioc-sig-seq] call genomic structural variation

I thought MAQ had its own indel caller?

João Fadista wrote:
> Hi,
> 
> I would like to know if there is any package (maybe ShortRead or Biostrings) that has some specific functions to call structural variations (CNVs and indels) in a genome given Solexa reads mapped by MAQ.
> 
> 
> Thanks in advance,
> João
> 
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