[Bioc-sig-seq] call genomic structural variation

[Cei Abreu-Goodger]

I thought MAQ had its own indel caller?

João Fadista wrote:
> Hi,
> 
> I would like to know if there is any package (maybe ShortRead or Biostrings) that has some specific functions to call structural variations (CNVs and indels) in a genome given Solexa reads mapped by MAQ.
> 
> 
> Thanks in advance,
> João
> 
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