[R-sig-ME] GlMM for ordinal and pseudo replication

[Ben Bolker]

   As I said, I think the ordinal package would serve you well.

   If you have *more specific* questions about your analysis, you can ask
on the r-sig-mixed-models at r-project.org mailing list.

  sincerely
    Ben Bolker



On Wed, Aug 20, 2014 at 11:54 AM, Mehdi Abedi <abedimail at gmail.com> wrote:

> Dear Ben,
> Thanks for your guidance. I know just multinominal package. I am not still
> sure which model fit to this kind of  ordinal data with pseudo replication.
> All the best,
> Mehdi
>
>
> On Thu, Aug 21, 2014 at 12:16 AM, Ben Bolker <bbolker at gmail.com> wrote:
>
>> Please send questions to r-sig-mixed-models at r-project.org wherever
>> possible (although I'm not 100% sure which attachments will make it to the
>> list -- I think CSV might be OK).  Have you looked at the very fine ordinal
>> package on CRAN?
>>
>>   cheers
>>     Ben Bolker
>>
>>
>>
>> On Wed, Aug 20, 2014 at 11:02 AM, Mehdi Abedi <abedimail at gmail.com>
>> wrote:
>>
>>> Dear Ben,
>>> I searched in lme4 package, however, i couldn't find solution yet.
>>> I want to compare 11 soil surface indicators among different treatments.
>>> Data are ordinal from 0-5. In addition i have pseudo replication.
>>> Can i do glm with family of binomial here? or mixed model of treatments
>>> and species?!
>>>
>>> Warm regards
>>> Mehdi
>>>
>>> --
>>>
>>>
>>> *Mehdi Abedi Department of Range Management*
>>>
>>> *Faculty of Natural Resources & Marine Sciences *
>>>
>>> *Tarbiat Modares University (TMU) *
>>>
>>> *46417-76489, Noor*
>>>
>>> *Mazandaran, IRAN *
>>>
>>> *mehdi.abedi at modares.ac.ir <Mehdi.abedi at tmu.ac.ir>*
>>>
>>> *Homepage
>>> <http://www.modares.ac.ir/en/Schools/nat/Academic_Staff/~mehdi.abedi>*
>>>
>>> *Tel: +98-122-6253101 <%2B98-122-6253101> *
>>>
>>> *Fax: +98-122-6253499 <%2B98-122-6253499>*
>>>
>>
>>
>
>
> --
>
>
> *Mehdi Abedi Department of Range Management*
>
> *Faculty of Natural Resources & Marine Sciences *
>
> *Tarbiat Modares University (TMU) *
>
> *46417-76489, Noor*
>
> *Mazandaran, IRAN *
>
> *mehdi.abedi at modares.ac.ir <Mehdi.abedi at tmu.ac.ir>*
>
> *Homepage
> <http://www.modares.ac.ir/en/Schools/nat/Academic_Staff/~mehdi.abedi>*
>
> *Tel: +98-122-6253101 <%2B98-122-6253101> *
>
> *Fax: +98-122-6253499 <%2B98-122-6253499>*
>

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