[R-sig-ME] fitting models with poisson distributed data
Page E. Van Meter
vanmete7 at msu.edu
Sat Oct 25 00:37:09 CEST 2008
Hi,
Now that I have the code figured out, I hoping for some help on defining
my model. I might be guilty of trying to fit an overly complex model to
my data, although my model seems very simple in comparison to what has
been discussed here. I'm hoping for feedback on my model design. Thanks
in advance!
I have some pretty ugly longitudinal data measuring hormones and
behaviors from individual hyenas over many years (355 samples from 39
individuals). We collect hormone samples based on opportunity and have
several samples from each individual (3-9 samples per hyena). My
ultimate goal is to see if my hormone data explains any of the variation
we see in the behavior data (aggression, I'll call it aggs). My
dependent measurement is a behavior rate, count of aggs over time just
prior to hormone sample collection. It is very zero heavy (lots of
individuals did not aggress prior to hormone sample donation) and
resistant to transformation to normality, but seems to be a pretty
poisson distribution. My predictors are hormones and reproductive state
(pregnant or lactating, which effect both aggression and hormones).
m2<-lmer(aggs~reprostate+hrm1+hrm2+(1|id), family=poisson, aggs)
Generalized linear mixed model fit using Laplace
Formula: aggs ~ reprostate + hrm1 + hrm2 + (1 | id)
Data: aggs
Family: poisson(log link)
AIC BIC logLik deviance
12369 12387 -6179 12359
Random effects:
Groups Name Variance Std.Dev.
id (Intercept) 4.9353 2.2216
number of obs: 307, groups: id, 39
Estimated scale (compare to 1 ) 7.682887
Fixed effects:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.07625 0.39575 -7.773 7.65e-15 ***
reprostate 2.32056 0.07724 30.044 < 2e-16 ***
hrm1 0.12575 0.04020 3.128 0.00176 **
hrm2 -0.80434 0.04770 -16.862 < 2e-16 ***
---
Correlation of Fixed Effects:
(Intr) statct ecent
statecat -0.381
ecent -0.085 0.271
acent 0.136 -0.339 -0.079
--
************************************
Page E. Van Meter
Michigan State University
Department of Zoology
vanmete7 at msu.edu
**http://msu.edu/~vanmete7/*
More information about the R-sig-mixed-models
mailing list