[BioC] EdgeR : CPM with names of genes
    anna [guest] 
    guest at bioconductor.org
       
    Wed Oct 31 15:37:53 CET 2012
    
    
  
Hello dear List,
when I save a cpm table (ordered by p-value for example) , I do not have the names of the genes but only cpms. How can I add them ?
I used :
> o <- order(lrt$table$PValue)
> tab <- cpm(y)
> write.table(tab, file="CPM.txt")
thank you,
anna
 -- output of sessionInfo(): 
R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252   
[3] LC_MONETARY=French_France.1252 LC_NUMERIC=C                  
[5] LC_TIME=French_France.1252    
attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods  
[8] base     
other attached packages:
[1] edgeR_3.0.0  limma_3.14.1
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