[Bioc-sig-seq] rtracklayer compilation error (make: *** [chain_io.o] Error 1)

[Hervé Pagès]

On 11-07-26 09:53 AM, Kasper Daniel Hansen wrote:
> On Tue, Jul 26, 2011 at 11:35 AM, Martin Morgan<mtmorgan at fhcrc.org>  wrote:
>> On 07/26/2011 07:14 AM, Ivan Gregoretti wrote:
>>>
>>> Great. The subversion compiles without problems.
>>>
>>> For those who usually don't install from SVN, this is how it's done:
>>>
>>> 1)
>>> Become root
>>
>> Not usually necessary. Just cd to some location on your file system, svn co
>> ... and then R CMD INSTALL rtracklayer. You might sudo R CMD INSTALL
>> rtracklayer if you were updating a system-wide installation (but then you
>> probably wouldn't want to be installing from svn).
>
> To be even more precise, you are supposed to do
>    R CMD build rtracklayer

Or, in this particular case, since the vignette won't build:

     R CMD build --no-vignettes rtracklayer

Cheers,
H.

>    R CMD INSTALL rtracklayer_$VERSION.tar.gz
>
> Kasper
>
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-- 
Hervé Pagès

Program in Computational Biology
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