[Bioc-sig-seq] using DEXSeq for RNA-seq data from Linux

[Martin Morgan]

On 07/22/2011 07:40 AM, Jane Merlevede wrote:
> Hello,
>
> I have used DESeq for gene differential expression analysis and I would like
> to use DEXSeq now for exon differential expression analysis.
> The point is that the library DEXSeq seems to be available only in R version
> 2.14.0 (unstable). I am working on Linux (CentOS), with R version 2.13.0. I
> have not found this R version 2.14.0 for Linux... Finally, I cannot use
> DEXSeq.
> I would like to know if DEXSeq will be soon available in R version 2.13.0.
> Or is the only solution to work with Windows?

As Sean mentions, this requires R-devel. It is not that difficult to 
build R from source on Linux, see sections 1 and 2 of

   http://cran.fhcrc.org/doc/manuals/R-admin.html

The source code is available here

   http://cran.fhcrc.org/sources.html

you are looking for R-devel.tar.gz

Martin

>
> Thank you for your help,
> Jane Merlevède
>
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>
>
>
>
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