[Bioc-sig-seq] finding matches to a motif

[Kasper Daniel Hansen]

I would start with
  Biostrings::matchPWM
The function name sounds promising :)

Kasper

On Tue, Jan 25, 2011 at 10:36 AM, Ivan Gregoretti <ivangreg at gmail.com> wrote:
> Hello everybody,
>
> Introduction:
> I have a Position Weigh Matrix that characterises the binding DNA
> sequence of a novel transcription factor.
>
> Goal:
> I want to find the genomic positions that are good matches for my PWM.
>
> Question:
> What are my options among the Bioconductor packages?
>
> Thank you,
>
> Ivan
>
>
> Ivan Gregoretti, PhD
> National Institute of Diabetes and Digestive and Kidney Diseases
> National Institutes of Health
> 5 Memorial Dr, Building 5, Room 205.
> Bethesda, MD 20892. USA.
> Phone: 1-301-496-1016 and 1-301-496-1592
> Fax: 1-301-496-9878
>
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