[Bioc-sig-seq] finding matches to a motif

[Ivan Gregoretti]

Hello everybody,

Introduction:
I have a Position Weigh Matrix that characterises the binding DNA
sequence of a novel transcription factor.

Goal:
I want to find the genomic positions that are good matches for my PWM.

Question:
What are my options among the Bioconductor packages?

Thank you,

Ivan


Ivan Gregoretti, PhD
National Institute of Diabetes and Digestive and Kidney Diseases
National Institutes of Health
5 Memorial Dr, Building 5, Room 205.
Bethesda, MD 20892. USA.
Phone: 1-301-496-1016 and 1-301-496-1592
Fax: 1-301-496-9878