[Bioc-sig-seq] Issue RSQLite

[Luke Zappia]

Having problems accessing a TranscriptDb object. Consistently getting the following error:

Error in sqliteFetch(rs, n = -1, ...) : 
  RSQLite driver: (RS_SQLite_fetch: failed first step: disk I/O error)

Are there any suggested solutions?

sessionInfo()
R version 2.12.1 (2010-12-16)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] GenomicFeatures_1.2.3 GenomicRanges_1.2.3   IRanges_1.8.8        

loaded via a namespace (and not attached):
 [1] Biobase_2.10.0     biomaRt_2.6.0      Biostrings_2.18.2  BSgenome_1.18.2   
 [5] DBI_0.2-5          RCurl_1.5-0        RSQLite_0.9-4      rtracklayer_1.10.6
 [9] tools_2.12.1       XML_3.2-0    

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