[Bioc-sig-seq] Question about sbanBam() with AB SOLID data

[Martin Morgan]

No there is no support for colorspace encoded reads. Martin

--  
Martin Morgan

On Nov 11, 2010, at 11:38 AM, ivan.borozan at utoronto.ca wrote:

> Hello list,
>
> Can scanBam() be used with AB SOLID data (bam files) so that it can  
> return sequences in color space and with the right lengths?
>
> My read sequences are 50 bp in lengths however scanBam() is  
> returning sequences of length between 25 - 27 (they seem to be  
> clipped) and which are not in color space.
>
> Many thanks for any suggestions,
>
> Ivan
>
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