[Bioc-sig-seq] Rsamtools scanBam output to Bam

[burak kutlu]

Hi 
Is there a way to create a SAM file from the output of scanBam from Rsamtools?
The reason we would like to do is use IGV to visualize a subset of regions in a large Bam file using load2newIGV function from SRAdb.
For this, we will need to put the list structure back to SAM format.
Please let me know if this is enough to give you an idea what we are trying to achieve.
Thanks in advance
-burak