[Bioc-sig-seq] DGE analysis?

[Mads Sønderkær]

Hi,
I'm a PhD student at Aalborg University, and I work daily with these 
kinds of data. Most of our data analysis is done with  customised perl 
scripts, (the method was actually developed  by our group).  I would be 
glad to come with sugestions, and answer some specific questions

/Mads

Jenny Drnevich skrev:
> Hi,
>
> Anyone working with Illumina's Digital Gene Expression data? It's 
> sequencing 17mer NLA3 "tags" pulled from 3' ends of transcripts on 
> Illumina's GAII. I have the sequence data processed already and read 
> counts, and now I'm just starting to try to estimate expression 
> levels. I think I can do it all with tools already available in 
> Bioconductor; I'm looking for someone who would be interested in 
> having discussions on the best way to analyze this sort of data. I 
> thought I'd try here first, and then the BioC mailing list.
>
> Thanks,
> Jenny
>
> Jenny Drnevich, Ph.D.
>
> Functional Genomics Bioinformatics Specialist
> W.M. Keck Center for Comparative and Functional Genomics
> Roy J. Carver Biotechnology Center
> University of Illinois, Urbana-Champaign
>
> 330 ERML
> 1201 W. Gregory Dr.
> Urbana, IL 61801
> USA
>
> ph: 217-244-7355
> fax: 217-265-5066
> e-mail: drnevich at illinois.edu
>
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