[Bioc-sig-seq] DGE analysis?

[Jenny Drnevich]

Hi,

Anyone working with Illumina's Digital Gene Expression data? It's 
sequencing 17mer NLA3 "tags" pulled from 3' ends of transcripts on 
Illumina's GAII. I have the sequence data processed already and read 
counts, and now I'm just starting to try to estimate expression 
levels. I think I can do it all with tools already available in 
Bioconductor; I'm looking for someone who would be interested in 
having discussions on the best way to analyze this sort of data. I 
thought I'd try here first, and then the BioC mailing list.

Thanks,
Jenny

Jenny Drnevich, Ph.D.

Functional Genomics Bioinformatics Specialist
W.M. Keck Center for Comparative and Functional Genomics
Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign

330 ERML
1201 W. Gregory Dr.
Urbana, IL 61801
USA

ph: 217-244-7355
fax: 217-265-5066
e-mail: drnevich at illinois.edu