[Bioc-sig-seq] Plotting Coverage for inhouse genome

[Harris A. Jaffee]

The details from Herve:

	http://bioconductor.org/packages/release/bioc/vignettes/BSgenome/ 
inst/doc/BSgenomeForge.pdf

On Dec 3, 2009, at 12:11 AM, Kasper Daniel Hansen wrote:

> On Dec 2, 2009, at 5:31 PM, Pratap, Abhishek wrote:
>
>> 2. Do I need to pack my reference genome as BSgenome data package in
>> order to do this ? If yes I just have the sequence and no group II  
>> mask
>> file.
>
> If you want a BSgenome package it is pretty easy to make (but it  
> might require some familiarity with R's package system), and it  
> does not require any mask files.  The are additonal - sometimes  
> useful - information.
>
> Kasper
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