[Bioc-sig-seq] Plotting Coverage for inhouse genome

[Kasper Daniel Hansen]

On Dec 2, 2009, at 5:31 PM, Pratap, Abhishek wrote:

> 2. Do I need to pack my reference genome as BSgenome data package in
> order to do this ? If yes I just have the sequence and no group II mask
> file.

If you want a BSgenome package it is pretty easy to make (but it might require some familiarity with R's package system), and it does not require any mask files.  The are additonal - sometimes useful - information.

Kasper