[Bioc-sig-seq] MINSEQE

[Martin Morgan]

Wolfgang Huber <huber at ebi.ac.uk> writes:

> Hi,
>
> As discussed in Seattle, here is a link to existing efforts for
> agreeing what is "Minimal Information about a High Throughput
> Sequencing Experiment"
>
>     http://uhts.lbl.gov/index.php/Main_Page
>     http://uhts.lbl.gov/images/2/2a/MINSEQE.pdf
>
> with a view that we might want to make our infrastructures compatible,
> and possibly participate in that discussion.
>
> In the good tradition of MIAME, this is a conceptual description, not
> a file format or alike.

One challenge is how to coordinate MINSEQE information with the
data. The data seems too big to maintain in an R object, so the data
and its metadata are decoupled and the entire object fragile.

Martin

> Best wishes
>    Wolfgang
>
> ------------------------------------------------------------------
> Wolfgang Huber  EBI/EMBL  Cambridge UK  http://www.ebi.ac.uk/huber
>
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

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