[Bioc-devel] R web interface

[Robert M. Flight]

On Thu, Aug 9, 2012 at 1:41 PM, Robert M. Flight
<robert.flight at louisville.edu> wrote:
> Have you looked at the Galaxy project (usegalaxy.org, and
> getgalaxy.org)? A lot of the tools there use R, and there is a recent
> initiative to be able to easily expose R functions as Galaxy tools
> using the RGalaxy package in Bioconductor. From your description of
> how analyses are described, it sounds very similar to what goes into
> making a tool available in Galaxy.
>
> Cheers,
>
> -Robert
>
>
> Robert M. Flight, Ph.D.
> University of Louisville Bioinformatics Laboratory
> University of Louisville
> Louisville, KY
>
> PH 502-852-1809 (HSC)
> PH 502-852-0467 (Belknap)
> EM robert.flight at louisville.edu
> EM rflight79 at gmail.com
> robertmflight.blogspot.com
> bioinformatics.louisville.edu/lab
> github.com/rmflight/general/wiki
>
> The most exciting phrase to hear in science, the one that heralds new
> discoveries, is not "Eureka!" (I found it!) but "That's funny ..." -
> Isaac Asimov
>
>
> On Wed, Aug 8, 2012 at 3:08 AM, Sjoerd Vosse <sjoerdvos at yahoo.com> wrote:
>> Ah thanks for the tip, I'll check it out!
>>
>> Message: 2
>> Date: Tue, 7 Aug 2012 10:45:35 -0700
>> From: "Kieran O'Neill" <koneill at bccrc.ca>
>> To: "bioc-devel at r-project.org" <bioc-devel at r-project.org>
>> Subject: Re: [Bioc-devel] R web interface
>> Message-ID:
>>     <B2B905CD6A0E134E9C2347E3B7BF7C8C0303D06FF41B at crcmail4.BCCRC.CA>
>> Content-Type: text/plain; charset="us-ascii"
>>
>> I
>>  know our lab uses GenePattern for this purpose. I think it fulfils all
>> of your requirements, and is quite mature (and free) software.
>>
>> http://www.broadinstitute.org/cancer/software/genepattern/
>>
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