[Bioc-devel] R web interface

[Robert M. Flight]

Have you looked at the Galaxy project (usegalaxy.org, and
getgalaxy.org)? A lot of the tools there use R, and there is a recent
initiative to be able to easily expose R functions as Galaxy tools
using the RGalaxy package in Bioconductor. From your description of
how analyses are described, it sounds very similar to what goes into
making a tool available in Galaxy.

Cheers,

-Robert


Robert M. Flight, Ph.D.
University of Louisville Bioinformatics Laboratory
University of Louisville
Louisville, KY

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On Wed, Aug 8, 2012 at 3:08 AM, Sjoerd Vosse <sjoerdvos at yahoo.com> wrote:
> Ah thanks for the tip, I'll check it out!
>
> Message: 2
> Date: Tue, 7 Aug 2012 10:45:35 -0700
> From: "Kieran O'Neill" <koneill at bccrc.ca>
> To: "bioc-devel at r-project.org" <bioc-devel at r-project.org>
> Subject: Re: [Bioc-devel] R web interface
> Message-ID:
>     <B2B905CD6A0E134E9C2347E3B7BF7C8C0303D06FF41B at crcmail4.BCCRC.CA>
> Content-Type: text/plain; charset="us-ascii"
>
> I
>  know our lab uses GenePattern for this purpose. I think it fulfils all
> of your requirements, and is quite mature (and free) software.
>
> http://www.broadinstitute.org/cancer/software/genepattern/
>
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