[R] trouble installing Rmpi on a debian machine

Thu Jul 5 22:52:47 CEST 2012

Dear R People:

I'm having trouble installing Rmpi on a debian machine.

Here is my output:
bccd at node000:~$ /bccd/home/bccd
bccd at node000:~$
bccd at node000:~$ export RMPI_TYPE=OPENMPI
bccd at node000:~$ R CMD INSTALL Rmpi_0.5-9.tar.gz
* installing to library '/bccd/home/bccd/R/x86_64-pc-linux-gnu-library/2.15'
* installing *source* package 'Rmpi' ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking mpi.h usability... yes
checking mpi.h presence... yes
checking for mpi.h... yes
Trying to find libmpi.so or libmpich.a ...
checking for main in -lmpi... yes
checking for openpty in -lutil... yes
checking for main in -lpthread... yes
configure: creating ./config.status
config.status: creating src/Makevars
** Creating default NAMESPACE file
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\"
-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
-DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1
-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1
-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I  -DMPI2 -DOPENMPI     -fpic
-O3 -pipe  -g  -c RegQuery.c -o RegQuery.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\"
-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
-DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1
-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1
-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I  -DMPI2 -DOPENMPI     -fpic
-O3 -pipe  -g  -c Rmpi.c -o Rmpi.o
In file included from Rmpi.c:18:
Rmpi.h:2:17: error: mpi.h: No such file or directory
In file included from Rmpi.c:18:
Rmpi.h:15: error: expected '=', ',', ';', 'asm' or '__attribute__'
before 'mpitype'
Rmpi.c:24: error: expected '=', ',', ';', 'asm' or '__attribute__'
before '*' token
Rmpi.c:25: error: expected '=', ',', ';', 'asm' or '__attribute__'
before '*' token
Rmpi.c:26: error: expected '=', ',', ';', 'asm' or '__attribute__'
before '*' token
Rmpi.c:27: error: expected '=', ',', ';', 'asm' or '__attribute__'
before '*' token
Rmpi.c:28: error: expected '=', ',', ';', 'asm' or '__attribute__'
before '*' token
Rmpi.c: In function 'mpi_initialize':
Rmpi.c:57: warning: implicit declaration of function 'MPI_Initialized'
Rmpi.c:76: warning: implicit declaration of function 'MPI_Init'
Rmpi.c:81: warning: implicit declaration of function 'MPI_Errhandler_set'
Rmpi.c:81: error: 'MPI_COMM_WORLD' undeclared (first use in this function)
Rmpi.c:81: error: (Each undeclared identifier is reported only once
Rmpi.c:81: error: for each function it appears in.)
Rmpi.c:81: error: 'MPI_ERRORS_RETURN' undeclared (first use in this function)
Rmpi.c:82: error: 'MPI_COMM_SELF' undeclared (first use in this function)
Rmpi.c:83: error: 'comm' undeclared (first use in this function)
Rmpi.c:83: error: 'MPI_Comm' undeclared (first use in this function)
Rmpi.c:83: error: expected expression before ')' token
Rmpi.c:83: error: expected ';' before 'R_chk_calloc'
Rmpi.c:84: error: 'status' undeclared (first use in this function)
Rmpi.c:84: error: 'MPI_Status' undeclared (first use in this function)
Rmpi.c:84: error: expected expression before ')' token
Rmpi.c:84: error: expected ';' before 'R_chk_calloc'
Rmpi.c:85: error: 'datatype' undeclared (first use in this function)
Rmpi.c:85: error: 'MPI_Datatype' undeclared (first use in this function)
Rmpi.c:85: error: expected expression before ')' token
Rmpi.c:85: error: expected ';' before 'R_chk_calloc'
Rmpi.c:86: error: 'info' undeclared (first use in this function)
Rmpi.c:86: error: 'MPI_Info' undeclared (first use in this function)
Rmpi.c:86: error: expected expression before ')' token
Rmpi.c:86: error: expected ';' before 'R_chk_calloc'
Rmpi.c:87: error: 'MPI_INFO_NULL' undeclared (first use in this function)
Rmpi.c:88: error: 'request' undeclared (first use in this function)
Rmpi.c:88: error: 'MPI_Request' undeclared (first use in this function)
Rmpi.c:88: error: expected expression before ')' token
Rmpi.c:88: error: expected ';' before 'R_chk_calloc'
Rmpi.c:89: error: 'MPI_REQUEST_NULL' undeclared (first use in this function)
Rmpi.c:91: error: 'MPI_COMM_NULL' undeclared (first use in this function)
Rmpi.c: In function 'mpi_finalize':
Rmpi.c:98: warning: implicit declaration of function 'MPI_Finalize'
Rmpi.c:99: error: 'comm' undeclared (first use in this function)
Rmpi.c:100: error: 'status' undeclared (first use in this function)
Rmpi.c:101: error: 'request' undeclared (first use in this function)
Rmpi.c:102: error: 'datatype' undeclared (first use in this function)
Rmpi.c:103: error: 'info' undeclared (first use in this function)
Rmpi.c: In function 'mpi_get_processor_name':
Rmpi.c:112: error: 'MPI_MAX_PROCESSOR_NAME' undeclared (first use in
this function)
Rmpi.c:113: warning: implicit declaration of function 'MPI_Get_processor_name'
Rmpi.c: In function 'mpi_any_source':
Rmpi.c:138: error: 'MPI_ANY_SOURCE' undeclared (first use in this function)
Rmpi.c: In function 'mpi_any_tag':
Rmpi.c:142: error: 'MPI_ANY_TAG' undeclared (first use in this function)
Rmpi.c: In function 'mpi_undefined':
Rmpi.c:146: error: 'MPI_UNDEFINED' undeclared (first use in this function)
Rmpi.c: In function 'mpi_proc_null':
Rmpi.c:150: error: 'MPI_PROC_NULL' undeclared (first use in this function)
Rmpi.c: In function 'mpi_info_create':
Rmpi.c:154: warning: implicit declaration of function 'MPI_Info_create'
Rmpi.c:154: error: 'info' undeclared (first use in this function)
Rmpi.c: In function 'mpi_info_set':
Rmpi.c:158: warning: implicit declaration of function 'MPI_Info_set'
Rmpi.c:158: error: 'info' undeclared (first use in this function)
Rmpi.c: In function 'mpi_info_get':
Rmpi.c:169: warning: implicit declaration of function 'MPI_Info_get'
Rmpi.c:169: error: 'info' undeclared (first use in this function)
Rmpi.c: In function 'mpi_info_free':
Rmpi.c:179: warning: implicit declaration of function 'MPI_Info_free'
Rmpi.c:179: error: 'info' undeclared (first use in this function)
Rmpi.c: In function 'mpi_realloc_comm':
Rmpi.c:185: error: 'comm' undeclared (first use in this function)
Rmpi.c:185: error: 'MPI_Comm' undeclared (first use in this function)
Rmpi.c:185: error: expected expression before ')' token
Rmpi.c:185: error: expected ';' before 'R_chk_realloc'
Rmpi.c:186: error: 'MPI_COMM_NULL' undeclared (first use in this function)
Rmpi.c: In function 'mpi_realloc_status':
Rmpi.c:199: error: 'status' undeclared (first use in this function)
Rmpi.c:199: error: 'MPI_Status' undeclared (first use in this function)
Rmpi.c:199: error: expected expression before ')' token
Rmpi.c:199: error: expected ';' before 'R_chk_realloc'
Rmpi.c: In function 'mpi_realloc_request':
Rmpi.c:212: error: 'request' undeclared (first use in this function)
Rmpi.c:212: error: 'MPI_Request' undeclared (first use in this function)
Rmpi.c:212: error: expected expression before ')' token
Rmpi.c:212: error: expected ';' before 'R_chk_realloc'
Rmpi.c:213: error: 'MPI_REQUEST_NULL' undeclared (first use in this function)
Rmpi.c: In function 'mpi_realloc_datatype':
Rmpi.c:224: error: 'datatype' undeclared (first use in this function)
Rmpi.c:224: error: 'MPI_Datatype' undeclared (first use in this function)
Rmpi.c:224: error: expected expression before ')' token
Rmpi.c:224: error: expected ';' before 'R_chk_realloc'
Rmpi.c: In function 'mpi_gather':
Rmpi.c:241: warning: implicit declaration of function 'MPI_Gather'
Rmpi.c:241: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:242: error: 'comm' undeclared (first use in this function)
Rmpi.c:246: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:255: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:263: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:268: warning: implicit declaration of function 'MPI_Bcast'
Rmpi.c:268: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_gatherv':
Rmpi.c:290: warning: implicit declaration of function 'MPI_Comm_size'
Rmpi.c:290: error: 'comm' undeclared (first use in this function)
Rmpi.c:291: warning: implicit declaration of function 'MPI_Comm_rank'
Rmpi.c:302: warning: implicit declaration of function 'MPI_Gatherv'
Rmpi.c:302: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:308: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:318: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:327: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:334: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_scatter':
Rmpi.c:360: warning: implicit declaration of function 'MPI_Scatter'
Rmpi.c:360: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:361: error: 'comm' undeclared (first use in this function)
Rmpi.c:365: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:374: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:382: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:388: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_scatterv':
Rmpi.c:409: error: 'comm' undeclared (first use in this function)
Rmpi.c:421: warning: implicit declaration of function 'MPI_Scatterv'
Rmpi.c:422: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:428: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:439: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:447: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:453: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_allgather':
Rmpi.c:478: warning: implicit declaration of function 'MPI_Allgather'
Rmpi.c:478: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:479: error: 'comm' undeclared (first use in this function)
Rmpi.c:483: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:493: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:500: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:506: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_allgatherv':
Rmpi.c:526: error: 'comm' undeclared (first use in this function)
Rmpi.c:535: warning: implicit declaration of function 'MPI_Allgatherv'
Rmpi.c:535: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:541: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:551: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:559: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:566: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_bcast':
Rmpi.c:590: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:590: error: 'comm' undeclared (first use in this function)
Rmpi.c:593: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:600: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:611: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:616: error: 'datatype' undeclared (first use in this function)
Rmpi.c:620: error: 'MPI_SUCCESS' undeclared (first use in this function)
Rmpi.c:622: error: 'MPI_MAX_ERROR_STRING' undeclared (first use in
this function)
Rmpi.c:623: warning: implicit declaration of function 'MPI_Error_string'
Rmpi.c: In function 'mpi_send':
Rmpi.c:645: warning: implicit declaration of function 'MPI_Send'
Rmpi.c:645: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:645: error: 'comm' undeclared (first use in this function)
Rmpi.c:648: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:652: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:655: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:660: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_recv':
Rmpi.c:681: warning: implicit declaration of function 'MPI_Recv'
Rmpi.c:681: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:681: error: 'comm' undeclared (first use in this function)
Rmpi.c:682: error: 'status' undeclared (first use in this function)
Rmpi.c:685: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:692: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:698: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:704: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_reduce':
Rmpi.c:722: error: 'MPI_Op' undeclared (first use in this function)
Rmpi.c:722: error: expected ';' before 'op'
Rmpi.c:727: error: 'op' undeclared (first use in this function)
Rmpi.c:727: error: 'MPI_SUM' undeclared (first use in this function)
Rmpi.c:730: error: 'MPI_PROD' undeclared (first use in this function)
Rmpi.c:733: error: 'MPI_MAX' undeclared (first use in this function)
Rmpi.c:736: error: 'MPI_MIN' undeclared (first use in this function)
Rmpi.c:739: error: 'MPI_MAXLOC' undeclared (first use in this function)
Rmpi.c:742: error: 'MPI_MINLOC' undeclared (first use in this function)
Rmpi.c:750: warning: implicit declaration of function 'MPI_Reduce'
Rmpi.c:751: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:751: error: 'comm' undeclared (first use in this function)
Rmpi.c:764: error: 'MPI_2INT' undeclared (first use in this function)
Rmpi.c:772: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:785: error: 'MPI_DOUBLE_INT' undeclared (first use in this function)
Rmpi.c: In function 'mpi_allreduce':
Rmpi.c:808: error: 'MPI_Op' undeclared (first use in this function)
Rmpi.c:808: error: expected ';' before 'op'
Rmpi.c:813: error: 'op' undeclared (first use in this function)
Rmpi.c:813: error: 'MPI_SUM' undeclared (first use in this function)
Rmpi.c:816: error: 'MPI_PROD' undeclared (first use in this function)
Rmpi.c:819: error: 'MPI_MAX' undeclared (first use in this function)
Rmpi.c:822: error: 'MPI_MIN' undeclared (first use in this function)
Rmpi.c:825: error: 'MPI_MAXLOC' undeclared (first use in this function)
Rmpi.c:828: error: 'MPI_MINLOC' undeclared (first use in this function)
Rmpi.c:837: warning: implicit declaration of function 'MPI_Allreduce'
Rmpi.c:838: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:838: error: 'comm' undeclared (first use in this function)
Rmpi.c:851: error: 'MPI_2INT' undeclared (first use in this function)
Rmpi.c:859: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:872: error: 'MPI_DOUBLE_INT' undeclared (first use in this function)
Rmpi.c: In function 'mpi_iprobe':
Rmpi.c:890: warning: implicit declaration of function 'MPI_Iprobe'
Rmpi.c:891: error: 'comm' undeclared (first use in this function)
Rmpi.c:892: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_probe':
Rmpi.c:897: warning: implicit declaration of function 'MPI_Probe'
Rmpi.c:898: error: 'comm' undeclared (first use in this function)
Rmpi.c:899: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_get_count':
Rmpi.c:904: error: 'MPI_Datatype' undeclared (first use in this function)
Rmpi.c:904: error: expected ';' before 'datatype'
Rmpi.c:908: error: 'datatype' undeclared (first use in this function)
Rmpi.c:908: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:911: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:914: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:917: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:923: warning: implicit declaration of function 'MPI_Get_count'
Rmpi.c:923: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_get_sourcetag':
Rmpi.c:933: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_barrier':
Rmpi.c:941: warning: implicit declaration of function 'MPI_Barrier'
Rmpi.c:941: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_comm_is_null':
Rmpi.c:945: error: 'comm' undeclared (first use in this function)
Rmpi.c:945: error: 'MPI_COMM_NULL' undeclared (first use in this function)
Rmpi.c: In function 'mpi_comm_size':
Rmpi.c:950: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_comm_rank':
Rmpi.c:956: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_comm_dup':
Rmpi.c:963: warning: implicit declaration of function 'MPI_Comm_dup'
Rmpi.c:963: error: 'MPI_COMM_WORLD' undeclared (first use in this function)
Rmpi.c:964: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_comm_free':
Rmpi.c:971: warning: implicit declaration of function 'MPI_Comm_free'
Rmpi.c:971: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_abort':
Rmpi.c:977: warning: implicit declaration of function 'MPI_Abort'
Rmpi.c:977: error: 'MPI_COMM_WORLD' undeclared (first use in this function)
Rmpi.c:979: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_comm_set_errhandler':
Rmpi.c:986: error: 'comm' undeclared (first use in this function)
Rmpi.c:987: error: 'MPI_ERRORS_RETURN' undeclared (first use in this function)
Rmpi.c: In function 'mpi_comm_test_inter':
Rmpi.c:992: warning: implicit declaration of function 'MPI_Comm_test_inter'
Rmpi.c:992: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_intercomm_merge':
Rmpi.c:1051: warning: implicit declaration of function 'MPI_Intercomm_merge'
Rmpi.c:1051: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_comm_remote_size':
Rmpi.c:1058: warning: implicit declaration of function 'MPI_Comm_remote_size'
Rmpi.c:1058: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_sendrecv':
Rmpi.c:1086: warning: implicit declaration of function 'MPI_Sendrecv'
Rmpi.c:1087: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:1089: error: 'comm' undeclared (first use in this function)
Rmpi.c:1089: error: 'status' undeclared (first use in this function)
Rmpi.c:1094: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:1102: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:1110: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c: In function 'mpi_sendrecv_replace':
Rmpi.c:1243: warning: implicit declaration of function 'MPI_Sendrecv_replace'
Rmpi.c:1243: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:1244: error: 'comm' undeclared (first use in this function)
Rmpi.c:1244: error: 'status' undeclared (first use in this function)
Rmpi.c:1247: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:1256: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:1262: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:1268: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_cart_create':
Rmpi.c:1288: warning: implicit declaration of function 'MPI_Cart_create'
Rmpi.c:1288: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_dims_create':
Rmpi.c:1296: warning: implicit declaration of function 'MPI_Dims_create'
Rmpi.c: In function 'mpi_cartdim_get':
Rmpi.c:1304: warning: implicit declaration of function 'MPI_Cartdim_get'
Rmpi.c:1304: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_cart_get':
Rmpi.c:1315: warning: implicit declaration of function 'MPI_Cart_get'
Rmpi.c:1315: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_cart_rank':
Rmpi.c:1326: warning: implicit declaration of function 'MPI_Cart_rank'
Rmpi.c:1326: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_cart_coords':
Rmpi.c:1336: warning: implicit declaration of function 'MPI_Cart_coords'
Rmpi.c:1336: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_cart_shift':
Rmpi.c:1348: warning: implicit declaration of function 'MPI_Cart_shift'
Rmpi.c:1348: error: 'comm' undeclared (first use in this function)
Rmpi.c: In function 'mpi_isend':
Rmpi.c:1366: warning: implicit declaration of function 'MPI_Isend'
Rmpi.c:1366: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:1367: error: 'comm' undeclared (first use in this function)
Rmpi.c:1367: error: 'request' undeclared (first use in this function)
Rmpi.c:1371: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:1376: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:1381: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:1387: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_irecv':
Rmpi.c:1406: warning: implicit declaration of function 'MPI_Irecv'
Rmpi.c:1406: error: 'MPI_INT' undeclared (first use in this function)
Rmpi.c:1407: error: 'comm' undeclared (first use in this function)
Rmpi.c:1407: error: 'request' undeclared (first use in this function)
Rmpi.c:1410: error: 'MPI_DOUBLE' undeclared (first use in this function)
Rmpi.c:1415: error: 'MPI_CHAR' undeclared (first use in this function)
Rmpi.c:1419: error: 'MPI_BYTE' undeclared (first use in this function)
Rmpi.c:1425: error: 'datatype' undeclared (first use in this function)
Rmpi.c: In function 'mpi_wait':
Rmpi.c:1435: warning: implicit declaration of function 'MPI_Wait'
Rmpi.c:1435: error: 'request' undeclared (first use in this function)
Rmpi.c:1435: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_test':
Rmpi.c:1442: warning: implicit declaration of function 'MPI_Test'
Rmpi.c:1442: error: 'request' undeclared (first use in this function)
Rmpi.c:1442: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_cancel':
Rmpi.c:1448: warning: implicit declaration of function 'MPI_Cancel'
Rmpi.c:1448: error: 'request' undeclared (first use in this function)
Rmpi.c: In function 'mpi_test_cancelled':
Rmpi.c:1454: warning: implicit declaration of function 'MPI_Test_cancelled'
Rmpi.c:1454: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_waitany':
Rmpi.c:1460: warning: implicit declaration of function 'MPI_Waitany'
Rmpi.c:1460: error: 'request' undeclared (first use in this function)
Rmpi.c:1460: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_testany':
Rmpi.c:1468: warning: implicit declaration of function 'MPI_Testany'
Rmpi.c:1468: error: 'request' undeclared (first use in this function)
Rmpi.c:1469: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_waitall':
Rmpi.c:1476: warning: implicit declaration of function 'MPI_Waitall'
Rmpi.c:1476: error: 'request' undeclared (first use in this function)
Rmpi.c:1476: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_testall':
Rmpi.c:1482: warning: implicit declaration of function 'MPI_Testall'
Rmpi.c:1482: error: 'request' undeclared (first use in this function)
Rmpi.c:1482: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_testsome':
Rmpi.c:1490: warning: implicit declaration of function 'MPI_Testsome'
Rmpi.c:1490: error: 'request' undeclared (first use in this function)
Rmpi.c:1491: error: 'status' undeclared (first use in this function)
Rmpi.c: In function 'mpi_waitsome':
Rmpi.c:1500: warning: implicit declaration of function 'MPI_Waitsome'
Rmpi.c:1500: error: 'request' undeclared (first use in this function)
Rmpi.c:1501: error: 'status' undeclared (first use in this function)
make: *** [Rmpi.o] Error 1
ERROR: compilation failed for package 'Rmpi'
* removing '/bccd/home/bccd/R/x86_64-pc-linux-gnu-library/2.15/Rmpi'
bccd at node000:~$

Now the strangest thing is that I installed Rmpi on a Rocks Cluster on
Tuesday with no trouble.

Any suggestions would be most appreciated.

Sincerely,
Erin

-- 
Erin Hodgess
Associate Professor
Department of Computer and Mathematical Sciences
University of Houston - Downtown
mailto: erinm.hodgess at gmail.com