[R] lme4 install trouble
David Reitter
dreitter at inf.ed.ac.uk
Thu Oct 11 13:01:13 CEST 2007
After upgrading to R 2.6.0, I'm having trouble running lmer:
model <- lmer(primed ~ log(dist.time)*role + 1|target.utt,
data=data.utts)
Error in UseMethod("as.logical") : no applicable method for "as.logical"
So I thought I'd upgrade lme4 to the latest version, but
unfortunately the compilation fails - perhaps there's a missing
#include:
R CMD INSTALL -l ~/usr/lib/R lme4_0.99875-8.tar.gz
* Installing *source* package 'lme4' ...
** libs
gcc -std=gnu99 -I/home/dreitter/usr/lib/R/include -I/home/dreitter/
usr/lib/R/include -I/usr/local/include -I"/home/dreitter/usr/lib/R/
library/Matrix/include" -fpic -g -O2 -c glmer.c -o glmer.o
glmer.c: In function âinternal_Gaussian_devianceâ:
glmer.c:185: error: âCHM_SPâ undeclared (first use in this function)
glmer.c:185: error: (Each undeclared identifier is reported only once
glmer.c:185: error: for each function it appears in.)
glmer.c:185: error: expected â;â before âLmâ
glmer.c:186: error: âCHM_FRâ undeclared (first use in this function)
glmer.c:186: error: expected â;â before âLcpâ
glmer.c:189: error: âCHM_DNâ undeclared (first use in this function)
glmer.c:189: error: expected â;â before âLtbâ
glmer.c:195: error: âLcpâ undeclared (first use in this function)
glmer.c:196: error: âLmâ undeclared (first use in this function)
glmer.c:197: error: âchbâ undeclared (first use in this function)
glmer.c:197: error: âLtbâ undeclared (first use in this function)
glmer.c: In function âinternal_bhatâ:
glmer.c:396: error: âCHM_FRâ undeclared (first use in this function)
glmer.c:396: error: expected â;â before âLâ
glmer.c:403: error: âLâ undeclared (first use in this function)
glmer.c: In function âglmer_MCMCsampâ:
glmer.c:657: error: âCHM_FRâ undeclared (first use in this function)
glmer.c:657: error: expected â;â before âLâ
glmer.c:680: error: âLâ undeclared (first use in this function)
make: *** [glmer.o] Error 1
ERROR: compilation failed for package 'lme4'
I've installed Matrix_0.999375-3 and lattice_0.16-5.
Any pointers would be appreciated.
--
David Reitter
ICCS/HCRC, Informatics, University of Edinburgh
http://www.david-reitter.com
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