[R] plot question
Tiandao Li
Tiandao.Li at usm.edu
Tue Oct 2 18:03:23 CEST 2007
Hello,
I have a question about how to plot a series of data. The folloqing is my
data matrix of n
> n
25p 5p 2.5p 0.5p
16B-E06.g 45379 4383 5123 45
16B-E06.g 45138 4028 6249 52
16B-E06.g 48457 4267 5470 54
16B-E06.g 47740 4676 6769 48
37B-B02.g 42860 6152 19276 72
35B-A02.g 48325 12863 38274 143
35B-A02.g 48410 12806 39013 175
35B-A02.g 48417 9057 40923 176
35B-A02.g 51403 13865 43338 161
45B-C12.g 50939 3656 5783 43
45B-C12.g 52356 5524 6041 55
45B-C12.g 49338 5141 5266 41
45B-C12.g 51567 3915 5677 43
35A-G04.g 40365 5513 6971 32
35B-D01.g 54217 12607 13067 93
35B-D01.g 55283 11441 14964 101
35B-D01.g 55041 9626 14928 94
35B-D01.g 54058 9465 14912 88
35B-A04.g 42745 12080 34271 105
35B-A04.g 41055 12423 34874 126
colnames(n) is concentrations, rownames(n) is gene IDs, and the rest is
Intensity. I want to plot the data this way.
x-axis is colnames(n) in the order of 0.5p, 2.5p,5p,and 25p.
y-axis is Intensity
Inside of plot is the points of intensity over 4 concentrations, points
from different genes have different color or shape. A regression line of
each genes crosss different concetrations, and at the end of line is gene
IDs.
Thanks,
Tiandao
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