[R] fitdistr, mle's and gamma distribution
    Lourens Olivier Walters 
    lwalters at cs.uct.ac.za
       
    Tue Sep 30 21:39:40 CEST 2003
    
    
  
Dear R Users, 
I am trying to obtain a best-fit analytic distribution for a dataset
with 11535459 entries. The data range in value from 1 to 300000000. I
use: fitdistr(data, "gamma") to obtain mle's for the parameters.
 
I get the following error:
Error in optim(start, mylogfn, x = x, hessian = TRUE, ...) :
        non-finite finite-difference value [1]
And the following warnings:
NaNs produced in: dgamma(x, shape, scale, log)
I have the same problem with the exponential distribution, but the
lognormal and weibull distributions don't have this problem. 
I suspect the problem has to do with:
"It means that in computing derivatives by finite differencing, one 
of the values is NA, +Inf or -Inf. Put some print values in 
your objective function and find out why it is giving a non-finite
value." - quote by Prof Ripley from r-help
as from the warnings it is clear that some of the values obtained during
maximum likelihood computations are NaN. I cannot however print values
of the objective function, as in my case it is dgamma which is called by
fitdistr, over which I don't have control.  
Can anyone please point me in the right direction?
Lourens
-- 
Lourens Olivier Walters <lwalters at cs.uct.ac.za>
Computer Science Masters Student
University of Cape Town
South Africa
http://people.cs.uct.ac.za/~lwalters/
    
    
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