[ESS] render into word_document, overwriting existing file

[Hüsing, Johannes]

Thanks for checking.

I am getting the following reaction:

> rmarkdown::render("u:/R/wurschtel/overwrite.Rmd")


processing file: overwrite.Rmd
1/2
2/2 [unnamed-chunk-1]
output file: overwrite.knit.md

"C:/PROGRA~1/RStudio/RESOUR~1/app/bin/quarto/bin/tools/pandoc" +RTS -K512m -RTS overwrite.knit.md --to docx --from markdown+autolink_bare_uris+tex_math_single_backslash --output overwrite.docx --lua-filter "C:\Users\jhuesing\AppData\Local\R\win-library\4.3\rmarkdown\rmarkdown\lua\pagebreak.lua" --highlight-style tango

Output created: overwrite.docx

### I edit the document and re-render it

> rmarkdown::render("u:/R/wurschtel/overwrite.Rmd")


processing file: overwrite.Rmd
1/2
2/2 [unnamed-chunk-1]
output file: overwrite.knit.md

"C:/PROGRA~1/RStudio/RESOUR~1/app/bin/quarto/bin/tools/pandoc" +RTS -K512m -RTS overwrite.knit.md --to docx --from markdown+autolink_bare_uris+tex_math_single_backslash --output overwrite.docx --lua-filter "C:\Users\jhuesing\AppData\Local\R\win-library\4.3\rmarkdown\rmarkdown\lua\pagebreak.lua" --highlight-style tango
pandoc.exe: overwrite.docx: withBinaryFile: permission denied (Permission denied)
Error: pandoc document conversion failed with error 1
>

Note that the rendered output is not formatted in a table, instead all values in a single column:

Here’s a table
A
B
c
0.2324371
0.8154899
0.2349193
0.5720512
-1.2034408
1.9160205
-1.5431504
-1.0144870
2.0656989
0.9873043
-0.4589923
-1.6725520
-1.4139548
-0.9191561
-0.3762419
0.8564714
-0.2095437
-1.3855111
1.0269104
1.3953234
0.0575684
1.6567231
1.2196799
-0.1213293
-1.3993003
-0.3573008
-0.9249994
0.3284130
0.2893624
0.4209140

> R.Version()
$platform
[1] "x86_64-w64-mingw32"

$arch
[1] "x86_64"

$os
[1] "mingw32"

$crt
[1] "ucrt"

$system
[1] "x86_64, mingw32"

$status
[1] ""

$major
[1] "4"

$minor
[1] "3.1"

$year
[1] "2023"

$month
[1] "06"

$day
[1] "16"

$`svn rev`
[1] "84548"

$language
[1] "R"

$version.string
[1] "R version 4.3.1 (2023-06-16 ucrt)"

$nickname
[1] "Beagle Scouts"

> packageVersion("rmarkdown")
Error: unexpected '>' in ">"
> Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '$' in "$"
> Error: unexpected '[' in "["
> > Error: unexpected '>' in ">"


Dr. Johannes Hüsing
Epidemiologie


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