[ESS] Can't load libraries after upgrading to R 3.3.2

[Simon Bonner]

Note also that the most recent version of JAGS is 4.2.0 (http://mcmc-jags.sourceforge.net/). It’s probably worth upgrading. JAGS is available via homebrew if you want an easy way to install it and keep it up to date.

Simon Bonner
Assistant Professor of Environmetrics/Director MMASc
Department of Statistical and Actuarial Sciences/Department of Biology
University of Western Ontario
 
Office: Western Science Centre rm 276
 
Email: sbonner6 using uwo.ca | Telephone: 519-661-2111 x88205 | Fax: 519-661-3813
Twitter: @bonnerstatslab | Website: http://simon.bonners.ca/bonner-lab/wpblog/
 

On 2016-12-13, 6:42 PM, "ESS-help on behalf of Ross.Darnell using data61.csiro.au" <ess-help-bounces using r-project.org on behalf of Ross.Darnell using data61.csiro.au> wrote:

    A quick google found this
    
    https://martynplummer.wordpress.com/2014/09/08/jags-3-4-0-for-mavericks/
    
    Ross
    
    -----Original Message-----
    From: ESS-help [mailto:ess-help-bounces using r-project.org] On Behalf Of Gonçalo Ferraz
    Sent: Wednesday, 14 December 2016 2:58 AM
    To: ess-help using r-project.org
    Subject: [ESS] Can't load libraries after upgrading to R 3.3.2
    
    Hi, 
    
    I just upgraded R to version 3.3.2 on a Mac OS X system. I suspect something may have gone wrong with the installation (despite a ‘successfully installed’ message) because the R.App is nowhere to be found.
    Nevertheless, I can open R in ESS, which how I always use it. The problem though, is I can’t install packages from the R command line within ESS. Here is a sample error message:
    
    > install.packages("rjags")
    --- Please select a CRAN mirror for use in this session --- trying URL 'https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz' <https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'>
    Content type 'application/x-gzip' length 249529 bytes (243 KB) ==================================================
    downloaded 243 KB
    
    The downloaded binary packages are in
    	/var/folders/kf/zkk64rtj5197pzwq94qfls0w0000gn/T//RtmpuSb7P1/downloaded_packages
    > library(rjags)
    Loading required package: coda
    Error : .onLoad failed in loadNamespace() for 'rjags', details:
     call: dyn.load(file, DLLpath = DLLpath, ...)
     error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so':
     dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib  Referenced from: /Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so
     Reason: image not found
    Error: package or namespace load failed for ‘rjags’
    
    This happens with other packages as well. Does anyone know what may be going on?
    
    Thank you,
    
    Gonçalo
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