[ESS] R crash on ESS
Vitalie Spinu
spinuvit at gmail.com
Mon Oct 28 21:22:35 CET 2013
This is a complex issue at a much deeper layers than ESS code is
positioned. Most likely it is a bug in maxent-rjava interaction which
shows in emacs sub-processes only. We have a peculiar sigfault bug on
github that shows only in emacs/ESS/Mac, and technically has nothing to
do with ESS. This one seems similar.
I use rgdal but the instructions that you gave are not clear to me. When
exactly the sigfault occurs?
Could you try with plain terminal "R --no-readline --no-save" (or
whatever your custom R command is for running from ess) and then
library(ESSR)?
Thanks,
Vitalie
>>> Ahmadou Dicko on Mon, 28 Oct 2013 19:46:52 +0000 wrote:
> Thanks Rodney, I'll try to dig further.
> Is the first time I encounter this type of error but I'll see If I can
> reproduce it using only R package that doesn't require extra libs.
> I'll let you know as soon as find something more precise.
> On Mon, Oct 28, 2013 at 7:36 PM, Rodney Sparapani <rsparapa at mcw.edu> wrote:
>> On 10/28/2013 07:45 AM, Ahmadou Dicko wrote:
>>
>>> Hi,
>>>
>>> I have a little problem with a script that used to work fine with ESS
>>> 13-05.
>>> This is smallest reproductible example I know and it requires to download
>>> a
>>> jar file (maxent,jar<http://www.cs.**princeton.edu/~schapire/**maxent/<http://www.cs.princeton.edu/~schapire/maxent/>>)>> and
>>>
>>> copy this jar file it on the folder ./java in the R dismo package.
>>>
>>> Everytime I run this script using ESS I have a segfault but it runs
>>> smoothly using Rstudio and the terminal :
>>>
>>> require(dismo)
>>> require(rgdal)
>>>
>>
>> Dear Ahmadou:
>>
>> This might be an ESS bug. I can't tell yet. Could you try
>> to narrow it down a bit more? I don't use rgdal
>> (or rJava, etc.) since they require other libraries (i.e. not just R
>> packages and more than the download above).
>>
>> --
>> Rodney Sparapani, PhD
>> Manager of Statistical & Computational Operations
>> Center for Patient Care and Outcomes Research (PCOR)
>> Medical College of Wisconsin (MCW), Milwaukee, USA
>> http://www.linkedin.com/in/**rodneysparapani<http://www.linkedin.com/in/rodneysparapani>>
More information about the ESS-help
mailing list