[ESS] Help with diagnosing semi-frequent Emacs/ESS/R crashes.
Steve Lianoglou
mailinglist.honeypot at gmail.com
Fri Apr 29 19:17:09 CEST 2011
Hi,
I'm not really sure which list to send this to, so I'll try here first
... then maybe bug-gnu-emacs(?) as well as r-sig-mac.
I'm running OSX.6.7, emacs 23.3 (from http://emacsformacosx.com/), ESS
(5.12), and R-devel (I periodically recompile R from svn:head -- I
wonder if this is the issue(?)).
It seems to happen "quite often" that either my ess/R process running
in emacs quits/aborts on me in a way that *seems* random to me. By
quite often, I mean maybe 2-3x per week, and I pretty much use ess/R
all day every day.
I'm always running emacs+ess+ R from within a screen session in the terminal.
Sometimes this happens in isolation, and emacs keeps humming along. I
just need to restart R (M-x R) then set it up to where we were before.
Other times, emacs comes crashing down with it. I'm not sure if these
two things are separate issues.related, actually.
I'm curious if other people experience this as well?
I just got one of the emacs + R crashes, which prompted me to send
this email, and I also have a crash-log that goes with it, which I'll
paste below in case anyone can make more sense of it than me -- but
perhaps it's more appropriate for a more mac-specific emacs or R
mailing list.
Thanks,
-steve
============= crash report ==============
Process: Emacs [88805]
Path: /Applications/Emacs.app/Contents/MacOS/Emacs
Identifier: Emacs
Version: ??? (???)
Code Type: X86-64 (Native)
Parent Process: bash [91498]
Date/Time: 2011-04-29 12:58:13.281 -0400
OS Version: Mac OS X 10.6.7 (10J869)
Report Version: 6
Interval Since Last Report: 271392 sec
Crashes Since Last Report: 3
Per-App Crashes Since Last Report: 3
Anonymous UUID: 71703963-9E2F-40E4-80CF-D6C8B10197C3
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Application Specific Information:
abort() called
Thread 0 Crashed: Dispatch queue: com.apple.main-thread
0 libSystem.B.dylib 0x00007fff840ca5d6 __kill + 10
1 libSystem.B.dylib 0x00007fff8416acd6 abort + 83
2 org.gnu.Emacs 0x000000010016f31c ns_term_shutdown + 44
3 org.gnu.Emacs 0x00000001000901e4 fatal_error_signal + 340
4 libSystem.B.dylib 0x00007fff840dc66a _sigtramp + 26
5 libSystem.B.dylib 0x00007fff840ca5d6 __kill + 10
6 libSystem.B.dylib 0x00007fff8416acd6 abort + 83
7 org.gnu.Emacs 0x0000000100092843 handle_interrupt + 707
8 org.gnu.Emacs 0x000000010009c699 decode_keyboard_code + 393
9 org.gnu.Emacs 0x000000010009c9c7 tty_read_avail_input + 599
10 org.gnu.Emacs 0x0000000100099375 read_avail_input + 309
11 org.gnu.Emacs 0x000000010009949a handle_async_input + 74
12 org.gnu.Emacs 0x0000000100099668
process_pending_signals + 24
13 org.gnu.Emacs 0x0000000100112359 Fassq + 201
14 org.gnu.Emacs 0x00000001000f7827 set_internal + 439
15 org.gnu.Emacs 0x00000001000b94f3 signal_before_change + 163
16 org.gnu.Emacs 0x00000001000b995f
prepare_to_modify_buffer + 287
17 org.gnu.Emacs 0x00000001000bcf8c del_range_1 + 236
18 org.gnu.Emacs 0x000000010002adb3
setup_echo_area_for_printing + 243
19 org.gnu.Emacs 0x0000000100123f74 write_string_1 + 964
20 org.gnu.Emacs 0x0000000100129432 print_error_message + 66
21 org.gnu.Emacs 0x000000010009b5f3 cmd_error_internal + 387
22 org.gnu.Emacs 0x000000010009b74a cmd_error + 266
23 org.gnu.Emacs 0x00000001001078a4
internal_condition_case + 212
24 org.gnu.Emacs 0x000000010009a9c7 command_loop_2 + 55
25 org.gnu.Emacs 0x0000000100107a20 internal_catch + 224
26 org.gnu.Emacs 0x000000010009b456 command_loop + 182
27 org.gnu.Emacs 0x000000010009b8bf recursive_edit_1 + 159
28 org.gnu.Emacs 0x000000010009ba5f Frecursive_edit + 287
29 org.gnu.Emacs 0x0000000100090f9c main + 3452
30 org.gnu.Emacs 0x00000001000019f4 start + 52
Thread 1: Dispatch queue: com.apple.libdispatch-manager
0 libSystem.B.dylib 0x00007fff8409512a kevent + 10
1 libSystem.B.dylib 0x00007fff84096ffd _dispatch_mgr_invoke + 154
2 libSystem.B.dylib 0x00007fff84096cd4
_dispatch_queue_invoke + 185
3 libSystem.B.dylib 0x00007fff840967fe
_dispatch_worker_thread2 + 252
4 libSystem.B.dylib 0x00007fff84096128 _pthread_wqthread + 353
5 libSystem.B.dylib 0x00007fff84095fc5 start_wqthread + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx:
0x00007fff5fbfb198 rdx: 0x0000000000000000
rdi: 0x0000000000015ae5 rsi: 0x0000000000000006 rbp:
0x00007fff5fbfb1b0 rsp: 0x00007fff5fbfb198
r8: 0x0000000000000001 r9: 0x000000010266f670 r10:
0x00007fff840c6616 r11: 0x0000000000000206
r12: 0x0000000000000006 r13: 0x00000001005369c8 r14:
0x000000010053c3d8 r15: 0x000000010053c3d8
rip: 0x00007fff840ca5d6 rfl: 0x0000000000000206 cr2: 0x000000011c07c880
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/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x7fff86645000 - 0x7fff8668fff7 com.apple.Metadata 10.6.3
(507.15) <5170FCE0-ED6C-2E3E-AB28-1DDE3F628FC5>
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
0x7fff868fb000 - 0x7fff86b83fef com.apple.security 6.1.1
(37594) <34DC0C3E-4546-D7ED-D855-390750954245>
/System/Library/Frameworks/Security.framework/Versions/A/Security
0x7fff86b84000 - 0x7fff86b98fff libGL.dylib ??? (???)
<0FA671EB-6FA0-BA97-C00A-C42247C22B26>
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff86c26000 - 0x7fff86d0cfef com.apple.DesktopServices
1.5.10 (1.5.10) <B7E00D85-F971-D85B-0217-482E15E9E924>
/System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x7fff86d16000 - 0x7fff86dcffff libsqlite3.dylib 9.6.0
(compatibility 9.0.0) <2C5ED312-E646-9ADE-73A9-6199A2A43150>
/usr/lib/libsqlite3.dylib
0x7fff86dd0000 - 0x7fff86dd0ff7 com.apple.Accelerate.vecLib
3.6 (vecLib 3.6) <4CCE5D69-F1B3-8FD3-1483-E0271DB2CCF3>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x7fff87163000 - 0x7fff87169ff7 com.apple.DiskArbitration 2.3
(2.3) <857F6E43-1EF4-7D53-351B-10DE0A8F992A>
/System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
0x7fff8716a000 - 0x7fff871e7fef libstdc++.6.dylib 7.9.0
(compatibility 7.0.0) <35ECA411-2C08-FD7D-11B1-1B7A04921A5C>
/usr/lib/libstdc++.6.dylib
0x7fff87727000 - 0x7fff8772dff7 com.apple.CommerceCore 1.0
(9) <4C66D962-91B5-F25C-A6FF-DFD5F924A0DD>
/System/Library/PrivateFrameworks/CommerceKit.framework/Versions/A/Frameworks/CommerceCore.framework/Versions/A/CommerceCore
0x7fff87753000 - 0x7fff87768ff7 com.apple.LangAnalysis 1.6.6
(1.6.6) <1AE1FE8F-2204-4410-C94E-0E93B003BEDA>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x7fff87769000 - 0x7fff8777aff7 libz.1.dylib 1.2.3
(compatibility 1.0.0) <97019C74-161A-3488-41EC-A6CA8738418C>
/usr/lib/libz.1.dylib
0x7fff8777b000 - 0x7fff87791fe7
com.apple.MultitouchSupport.framework 207.10 (207.10)
<458F0259-6EDC-16BA-E6AA-1CEED002D188>
/System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
0x7fff8787d000 - 0x7fff87bb1fff
com.apple.CoreServices.CarbonCore 861.34 (861.34)
<B5680539-CB31-6C6D-C0AD-606D4D46E7F5>
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x7fff87be4000 - 0x7fff87c07fff com.apple.opencl 12.3.6
(12.3.6) <42FA5783-EB80-1168-4015-B8C68F55842F>
/System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff87c08000 - 0x7fff87c41fef libcups.2.dylib 2.8.0
(compatibility 2.0.0) <F8E0672F-C0B4-B161-E50D-A1405D14F21C>
/usr/lib/libcups.2.dylib
0x7fff87c42000 - 0x7fff87e00fff libicucore.A.dylib 40.0.0
(compatibility 1.0.0) <2C6ECACF-CD56-1714-6F63-CB6F5EE7A1E2>
/usr/lib/libicucore.A.dylib
0x7fff87f0c000 - 0x7fff87f32fe7 libJPEG.dylib ??? (???)
<AD42F658-7C32-EEE5-8341-A8EE6476BF46>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
0x7fff88043000 - 0x7fff88100fff
com.apple.CoreServices.OSServices 359 (359)
<8F509D8D-4C94-9A1C-3A87-5B775D9F6075>
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x7fff88101000 - 0x7fff88af7fff com.apple.AppKit 6.6.7
(1038.35) <9F4DF818-9DB9-98DA-490C-EF29EA757A97>
/System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7fff88c8d000 - 0x7fff88c8dff7 com.apple.Accelerate 1.6
(Accelerate 1.6) <15DF8B4A-96B2-CB4E-368D-DEC7DF6B62BB>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x7fff88c8f000 - 0x7fff88c95ff7 IOSurface ??? (???)
<EAD87C9F-BADC-7116-4ADD-0B0679459D24>
/System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
0x7fff88ede000 - 0x7fff88f3efe7 com.apple.framework.IOKit 2.0
(???) <D107CB8A-5182-3AC4-35D0-07068A695C05>
/System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff88f3f000 - 0x7fff891c2fe7 com.apple.Foundation 6.6.6
(751.53) <476E617B-B59B-53DE-991D-98C1993BCBCE>
/System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x7fffffe00000 - 0x7fffffe01fff libSystem.B.dylib ??? (???)
<9BAEB2F2-B485-6349-E1AB-637FE12EE770> /usr/lib/libSystem.B.dylib
Model: MacPro3,1, BootROM MP31.006C.B05, 8 processors, Quad-Core Intel
Xeon, 2.8 GHz, 8 GB, SMC 1.25f4
Graphics: ATI Radeon HD 2600 XT, ATI Radeon HD 2600, PCIe, 256 MB
Memory Module: global_name
Bluetooth: Version 2.4.0f1, 2 service, 19 devices, 1 incoming serial ports
Network Service: Ethernet 1, Ethernet, en0
PCI Card: ATI Radeon HD 2600, Display, Slot-1
Serial ATA Device: ST3500630AS P, 465.76 GB
Serial ATA Device: ST31000528AS, 931.51 GB
Serial ATA Device: WDC WD2001FASS-00U0B0, 1.82 TB
Parallel ATA Device: PIONEER DVD-RW DVR-112D
USB Device: Hub, 0x05ac (Apple Inc.), 0x911c, 0xfd500000
USB Device: Kinesis Keyboard Hub, 0x05f3, 0x0081, 0xfd530000
USB Device: Apple Optical USB Mouse, 0x05ac (Apple Inc.), 0x0304, 0xfd534000
USB Device: Composite Device, 0x05f3, 0x0007, 0xfd532000
USB Device: Apple Cinema HD Display, 0x05ac (Apple Inc.), 0x921c, 0xfd520000
USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.),
0x8206, 0x5d200000
FireWire Device: built-in_hub, Up to 800 Mb/sec
FireWire Device: iPod, Apple Computer, Inc., Up to 400 Mb/sec
FireWire Device: unknown_device, Unknown
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
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