[ESS] ESS, AUCTeX, S/Rweave (noweb) and mode switching

Brett Presnell presnell at stat.ufl.edu
Sat Mar 8 18:30:27 CET 2008


I apologize for the cross-posting, but I'm not sure if this is more of
an AUCTeX or an ESS question.

I am editing a multipart file for some course notes (but I can
duplicate the problem in even the simplest possible analogous case).
The master file is just a latex file that uses \include{} to include
the various chapters and appendices.  At present I also have these
lines at the bottom of the file (the "%%% TeX-PDF-mode: t" is a recent
addition):

%%% Local Variables: 
%%% mode: latex
%%% TeX-PDF-mode: t
%%% TeX-master: t
%%% End: 

A couple of the chapters and appendices are also latex files, but most
are Rweave files with the extension .Rnw.  At present I have these
lines at the bottom of these files (again, "%%% TeX-PDF-mode: t" is a
recent addition):

%%% Local Variables: 
%%% mode: latex
%%% TeX-PDF-mode: t
%%% TeX-master: "glm-notes"
%%% End: 

(Side question: shouldn't TeX-PDF-mode be picked up from the master
file?)

The problem is that once I move into a code chunk in a .Rnw file
(automatically switching from AUCTeX to ESS mode) and then back out of
the code chunch (automatically switching back to AUCTeX mode),
TeX-master and TeX-PDF-mode both get set to nil.  Worse, this also
causes the invaluable reftex to lose all its reference information.

Typing C-cC-n (i.e., running TeX-normal-mode) causes all the
auctex/reftex information to be reset properly.  However, the Noweb
menu disappears when I do this and when I move back into a code chunk
the buffer remains in PDFLaTeX/M mode instead of ESS[S] mode.  Typing
C-cC-n again seems to toggle this behavior, but then TeX-master and
TeX-PDF-mode get set to nil again.  Obviously this whole process
becomes especially annoying when editing a complicated document.

FWIW, I can partially automate the call of TeX-normal-mode with

  (add-hook 'noweb-select-doc-mode-hook 
	    (function (lambda ()
			(TeX-normal-mode t))))

but for the reasons described above, this kludge does not solve the
problem.

Any ideas?  Am I the only one having this problem?

I've included the relevant version information and the relevant part
of my .emacs file below (with the add-hook above commented out).
Briefly my current set up is ess-mode 5.3.6, auctex 11.85, both in
emacs 22.1.1 running on ubuntu gutsy.  I've also attached a trivial
pair of test files for anyone who wants to try this (only "slave.Rnw"
is actually needed).

Thanks for any guidance that anyone can provide.

-- 
Brett Presnell
Department of Statistics
University of Florida

----------------------------------------------------------------------
--------------------------- From my .emacs ---------------------------
----------------------------------------------------------------------

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; AUCTEX, REFTEX, BIB-CITE, PREVIEW-LATEX
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

;;; AUCTEX
(load "auctex.el" nil t t)
(setq TeX-style-private "~/.emacs.d/auctex/style/")
(setq-default TeX-master nil)
(setq TeX-parse-self t
      TeX-auto-save t)

;; Turn on LaTeX-math-mode in both latex and plain tex modes:
(add-hook 'LaTeX-mode-hook 'LaTeX-math-mode)
(add-hook 'plain-TeX-mode-hook
	     (function
	      (lambda ()
		(require 'latex)
		(LaTeX-math-mode))))

; (setq font-latex-fontify-sectioning 'color)

(setq TeX-file-extensions
      '("Snw" "Rnw" "nw" "tex" "sty" "cls" "ltx" "texi" "texinfo"))

;;; REFTEX
(require 'reftex)
(setq reftex-plug-into-AUCTeX t)
(add-hook 'LaTeX-mode-hook 'turn-on-reftex)
(setq reftex-enable-partial-scans t
      reftex-save-parse-info t
      reftex-use-multiple-selection-buffers t)
;; These lines seem to fix my problems with reftex and search paths.
; (setq reftex-use-external-file-finders t) ; CAREFUL WITH THIS ONE
(setq reftex-texpath-environment-variables '("!kpsewhich -show-path=.tex"))
(setq reftex-bibpath-environment-variables '("!kpsewhich -show-path=.bib"))
(setq reftex-file-extensions
      '(("tex" . (".Rnw" ".Snw" ".nw" ".tex" ".ltx")) ("bib" . (".bib"))))
(setq reftex-try-all-extensions t)

; ;; This adds some of my own theorem like environments to reftex's list
(setq reftex-label-alist 
      '(("theorem" ?h "thm:" "~\\ref{%s}" t ("theorem"))
	("proposition" ?p "prop:" "~\\ref{%s}" t ("proposition"))
	("corollary" ?c "cor:" "~\\ref{%s}" t ("corollary"))
	("lemma" ?l "lem:" "~\\ref{%s}" t ("lemma"))
	("definition" ?d "def:" "~\\ref{%s}" t ("definition"))
	("remark" ?r "rem:" "~\\ref{%s}" t ("remark"))
	))
;; and this makes auctex label them automagically
(add-hook 'LaTeX-mode-hook 
	  (lambda ()
	    (LaTeX-add-environments
	     '("theorem" LaTeX-env-label)
	     '("proposition" LaTeX-env-label)
	     '("corollary" LaTeX-env-label)
	     '("lemma" LaTeX-env-label)
	     '("definition" LaTeX-env-label)
	     '("remark" LaTeX-env-label)
	     )))

;;;
;;; BIB-CITE
;;
;; I'm not sure about this yet, but may as well try it.
(autoload 'turn-on-bib-cite "bib-cite")
(add-hook 'LaTeX-mode-hook 'turn-on-bib-cite)
(setq bib-cite-use-reftex-view-crossref t)

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; ESS
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; 
;; (add-to-list 'load-path "/usr/share/emacs/site-lisp/ess")
;; (add-to-list 'load-path "/usr/local/share/emacs/site-lisp/ess")
(require 'ess-site)
;;
;; Sweave mode stuff.
;;
(defun Rnw-mode ()
  (require 'ess-noweb)
;  (add-hook 'noweb-select-doc-mode-hook 
;	    (function (lambda ()
;			(TeX-normal-mode t))))
  (noweb-mode)
  (if (fboundp 'R-mode)
      (setq noweb-default-code-mode 'R-mode)))

(add-to-list 'auto-mode-alist '("\\.Rnw\\'" . Rnw-mode))
(add-to-list 'auto-mode-alist '("\\.Snw\\'" . Rnw-mode))


----------------------------------------------------------------------
-------------------- ``M-x TeX-submit-bug-report' --------------------
----------------------------------------------------------------------

Emacs  : GNU Emacs 22.1.1 (i486-pc-linux-gnu, GTK+ Version 2.12.0)
 of 2007-11-06 on terranova, modified by Ubuntu
Package: 11.85

current state:
==============
(setq
 AUCTeX-date "2008-02-10"
 window-system 'x
 LaTeX-version "2e"
 TeX-style-path '("style" "auto" "~/.emacs.d/auctex/style/"
		  "/home/presnell/elisp/auctex/style"
		  "/home/presnell/var/auctex")
 TeX-auto-save t
 TeX-parse-self t
 TeX-master nil
 TeX-command-list '(("TeX" "%(PDF)%(tex) %`%S%(PDFout)%(mode)%' %t"
		     TeX-run-TeX nil
		     (plain-tex-mode ams-tex-mode texinfo-mode) :help
		     "Run plain TeX")
		    ("LaTeX" "%`%l%(mode)%' %t" TeX-run-TeX nil
		     (latex-mode doctex-mode) :help "Run LaTeX")
		    ("Makeinfo" "makeinfo %t" TeX-run-compile nil
		     (texinfo-mode) :help "Run Makeinfo with Info output")
		    ("Makeinfo HTML" "makeinfo --html %t" TeX-run-compile nil
		     (texinfo-mode) :help "Run Makeinfo with HTML output")
		    ("AmSTeX" "%(PDF)amstex %`%S%(PDFout)%(mode)%' %t"
		     TeX-run-TeX nil (ams-tex-mode) :help "Run AMSTeX")
		    ("ConTeXt" "texexec --once --texutil %(execopts)%t"
		     TeX-run-TeX nil (context-mode) :help "Run ConTeXt once")
		    ("ConTeXt Full" "texexec %(execopts)%t" TeX-run-TeX nil
		     (context-mode) :help "Run ConTeXt until completion")
		    ("BibTeX" "bibtex %s" TeX-run-BibTeX nil t :help
		     "Run BibTeX")
		    ("View" "%V" TeX-run-discard t t :help "Run Viewer")
		    ("Print" "%p" TeX-run-command t t :help "Print the file")
		    ("Queue" "%q" TeX-run-background nil t :help
		     "View the printer queue" :visible TeX-queue-command)
		    ("File" "%(o?)dvips %d -o %f " TeX-run-command t t :help
		     "Generate PostScript file")
		    ("Index" "makeindex %s" TeX-run-command nil t :help
		     "Create index file")
		    ("Check" "lacheck %s" TeX-run-compile nil (latex-mode)
		     :help "Check LaTeX file for correctness")
		    ("Spell" "(TeX-ispell-document \"\")" TeX-run-function nil
		     t :help "Spell-check the document")
		    ("Clean" "TeX-clean" TeX-run-function nil t :help
		     "Delete generated intermediate files")
		    ("Clean All" "(TeX-clean t)" TeX-run-function nil t :help
		     "Delete generated intermediate and output files")
		    ("Other" "" TeX-run-command t t :help
		     "Run an arbitrary command")
		    )
 )


----------------------------------------------------------------------
-------------------- `M-x ess-submit-bug-report' ---------------------
----------------------------------------------------------------------

[ess-site.el]: ess-customize-alist=nil 
[ess-site.el _2_]: ess-customize-alist=nil 
(S): ess-s-versions-create making M-x defuns for 
 
(R): ess-r-versions-create making M-x defuns for 
 
(n-i-m-l: 1)(n-i-m-l: 1)(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=glm-chap02.Rnw 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(n-i-m-l: 1)(n-i-m-l: 1)(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=glm-chap03.Rnw 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(n-i-m-l: 1)(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=glm-chap02.Rnw 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(n-i-m-l: 1)(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=glm-chap02.Rnw 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(n-i-m-l: 1)(n-i-m-l: 1)(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=glm-chap02.Rnw 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(n-i-m-l: 1)(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=glm-chap02.Rnw 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.



Emacs  : GNU Emacs 22.1.1 (i486-pc-linux-gnu, GTK+ Version 2.12.0)
 of 2007-11-06 on terranova, modified by Ubuntu
Package: ess-mode 5.3.6

current state:
==============
(setq
 ess-language "S"
 ess-dialect "R"
 ess-ask-for-ess-directory t
 ess-ask-about-transfile nil
 ess-directory nil
 ess-keep-dump-files "always"
 ess-source-directory "/tmp/"
 )

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