[BioC] a question about trimLRPatterns?

[Steve Lianoglou]

Hi,

On Tue, Oct 30, 2012 at 4:11 PM, wang peter <wng.peter at gmail.com> wrote:
> thx
> i must use another function to do glocal match
> and trim them
>
> rigth?

Sounds about right to me. Perhaps you're looking for `matchPattern` or
`pairwiseAlignment`?

Out of curiosity, are you pre-processing NGS data?

If so, what type of reads have artifacts in the center that you want
to remove but still "trust" the flanking sequence?

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact