[BioC] EdgeR: how to save results for list of genes ?

[Gordon K Smyth]

  tab <- topTags(lrt)
  write.table(tab, file="mygenelist.txt")

For more details, type ?write.table

Gordon

> Date: Wed, 24 Oct 2012 02:32:48 -0700 (PDT)
> From: "anna [guest]" <guest at bioconductor.org>
> To: bioconductor at r-project.org, m.nadira at yahoo.fr
> Subject: [BioC] EdgeR: how to save results for list of genes ?
>
>
> Hello,
> how can I save my list of differentially expressed genes after having my top DE gene visualized with  topTags(lrt)?
>
> (I followed step by step the example of carcinoma vs matched normal tissue)
>
> thanks,
> anna
>
> -- output of sessionInfo():
>
> R version 2.15.1 (2012-06-22)
> Platform: i386-pc-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252
> [3] LC_MONETARY=French_France.1252 LC_NUMERIC=C
> [5] LC_TIME=French_France.1252
>
> attached base packages:
> [1] splines   stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
> [1] edgeR_3.0.0  limma_3.14.1
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.1
>

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