[BioC] AnnotationDbi weirdness
James W. MacDonald
jmacdon at uw.edu
Tue Oct 23 22:54:02 CEST 2012
I am having the following problem:
> aargh <- mogene10sttranscriptcluster_dbconn()
> dbDisconnect(aargh)
[1] TRUE
> get("10338001", mogene10sttranscriptclusterENTREZID)
Error in sqliteExecStatement(con, statement, bind.data) :
RS-DBI driver: (expired SQLiteConnection)
Any suggestions?
Best,
Jim
> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] mogene10sttranscriptcluster.db_8.0.1 org.Mm.eg.db_2.8.0
[3] RSQLite_0.11.2 DBI_0.2-5
[5] AnnotationDbi_1.20.2 Biobase_2.18.0
[7] BiocGenerics_0.4.0
loaded via a namespace (and not attached):
[1] IRanges_1.16.3 parallel_2.15.1 stats4_2.15.1
--
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099
More information about the Bioconductor
mailing list